Verticillium alfalfae: VDBG_01002 Help Entry VDBG_01002        CDS       T02227                                  Name (RefSeq) THO complex subunit 2   KO K12879   THO complex subunit 2 Organism val  Verticillium alfalfae Pathway val03013   Nucleocytoplasmic transport val03040   Spliceosome Brite KEGG Orthology (KO) [BR:val00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     VDBG_01002   09122 Translation    03013 Nucleocytoplasmic transport     VDBG_01002  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:val03019]     VDBG_01002    03041 Spliceosome [BR:val03041]     VDBG_01002 Messenger RNA biogenesis [BR:val03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     TREX complex      VDBG_01002 Spliceosome [BR:val03041]  Complex C   Other components    EJC/TREX     VDBG_01002  Other splicing related proteins   Spliceosome associated proteins (SAPs)    TREX complex     VDBG_01002 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  THOC2_N Tho2 Thoc2 Motif Other DBs NCBI-GeneID:  9530900 NCBI-ProteinID:  XP_003009319 UniProt:  C9S847 LinkDB All DBs AA seq 2265 aa AA seqDB search MAPAKRKRPDQSFDGNRPSPHRPADTAMGQRGRDGHDGGGRGGRGGGRNGRRNDRRDSTQ NQAGQGAPYHHQQQYASSPTTSRHQTPRAPAAAAAPPAPPVEQPPPAAPAPAATLPATIS SNYPYEILTDDKIASWDSGSRQALIEHGVQSRQDVDITELSSLFQEFVQSVAEYRLNPTD AGACVKEILGPETKEVIKDSYSFEPHTLLLDTITIIMDNQPDLFIPEFRDFLIATAISPT LIRQVLDAPLLQKLGLIREVFGKMAIRHSTNMLYRQANYNLLREESEGYSKLVTELFSCV DDYDTPTTREAEAAFEKIKGLIGTFDLDVGRVLDVALDVHATSLVKASKFFVKLLRVSSW WPRSNTPFDAIVQGGLPDWALPLPSELDESAIAEVRRQRDIEFWERARENQIQAFFELGG RRASEQDLERAAADTAGAATEGEAVRSWITATLRSRDTTTRPKAASKPDQAEGADKKEED EPHEQKGALVISLLTIGAIPEALFLIGRWPWLLQGYTDITSRVNRILEYSIDKLYQATRP TTTSSMACPPKKVADSDQSGVTKGSVRRSEIPIRKSMRWPWPDGRLGVSDQHYRFYWDEW SDNVPVCQTVDDVFTLSSSLLNIAGVNIGKSEQLLVMLASIGQKSLAEDQSKHNLDRWQD LLRRILVPALSTSKGAPATANLVWSLLKQYPIATRYSIYADWFEGAPNRGSEVRRAAMVK AFADTKSKAQGVMKRISKDNAVEMGRALAKLTHSSPGIVFKVALELMMSYGNLSDVFADN QRSRTQASYILSISPWLLELSKLTGKLFKRYRELDATPILRYVHDQLLHGNSTDLIILSE LVDAMGGIVNTADIGYDEVIAMSGMALLQRRTLISLQDRRFEPAVIASAKRLTHALVDSR LAGRLLVNIAQFRQSATFRLSDDGAHVKYLSSLMDNSHQILVQYLDLLRANLEPAEFDRL VPSISQLMAEFGLDASFAFSIGRESLAAQIFSKPTTAPKQSSQSAPDAEGDVSMGDDAIA TEPASDTTKSETPAPEAPGEAHVTAATSFDALNPIVESLRSTTPESAWQKISIEFFAIFW ALQLGDLGVPWAPYHAQQARLQEQYRQVTKDRKLLQAQKSAKQKELKDTMDTFIKESTQQ SERVAKAKVLITKRMDTWFMGEPLKPNGVSDAILERCLLPRIILSKIDSEYSFALIKYIH ELSCPNFRLMALYDRLFKANRLRGMLFTCTVQEGVYLGHFFHLILRELNKWHKSSADYEK EAIGKSKRSGGYLGFATAFDDEGHPTSHLDHAEFQDVLYGWHKNINLALKACLSGTEWTH IRNAISFLTEAHEDFPAVTFMGTQLQSQLKTIVTREKNLRGDLWLTAQRVLGNMAKMEKT WIAPQAFRTNLSTQSAAQGNEDEQASSSGGSLRATAPEFRPSPQNEDGEVQDGKASFPQR STSTRRDAKGTPQSNQRDSPRLPVSTPSGPKPMHGALSHNRSSTPNPSETLPHAPGSSNR DPRHPNMPSSRNASSLPRGPGLPQRPPGPIPEHQPLNRFTPAGPNDRRDVRDHRDPRAPR DSRDARESRDQRDTRDSKEPKGGDVSRQENSRENSRPERRGPDVPSRDSGRLSEGDRPPR RDHLQSGREAETPKDRLPQSTNQGPDVDRSGREAGTPVGGSTAAIEPPINPARAALFQND TPSRTERPDRERSRARDGEQRGAQRHQGPEGPEHDRSEIMNLERPVLFGDGRQEPLPRQP RDDPRERDRAPRKDSPARGGRVHPDRLSSDPFRDAVREEQFGRPTHPTDARNPRNPREPR DPRDPRDPRDPRDPRDHRTDDSRASFQRGPERDSAFSGSDSNTTRDAFLSRAERDNGRPK QDDQYGRLNSNYPIASVVDAPSGPRGRGARPNPRNNFNTPPPPPPRGDGRLPRTGSPGAS TTDDRHPPAGPSSGRGHRSQNASGSTPNSNAVAPGVHPDRLAQMGPPPPVSVGDAHLRQP TSTPDRPLPLGQGSHHIPSGNFNGPTPDFATPTGPASGGGRKQGGRRQLEGINSTLQQAQ GRPDPIKGTTIRGRSSRTNLANSDAQILTGGSPVSTPAHEEYQDSLQSSDKRPYEGDDHG RGEHERGRRERDRSERSGRPSRRSSRERQRSPGGHEREGKDSRSHRDRRSGAAGHGSSSR DEHEPRRSTRDPSGGHPRESQTGALPPNNRDGAPRDSRHRGDRGDMGPGGLVAEEWNGSA SRHQRSGQRDSVLRPPDDRRDPRDNSRKRRSEDANGFSVEKRQRR NT seq 6798 nt NT seq  +upstreamnt  +downstreamnt atggctcccgccaagcgcaagcgacccgatcaatctttcgacggcaaccgaccctcgccc caccgacctgcagataccgccatgggtcaacgcggtcgagatggccatgatggtggtgga agaggtggccgtggtggcggcaggaacggcaggaggaacgatcgtcgcgactcgacgcag aaccaggctggacaaggcgctccctaccaccatcaacaacaatatgcttcttcaccgacg acctctcgccaccagacgccacgagcaccagccgctgccgccgccccgcctgctcctcct gtggaacagccccctcctgccgcacctgcgccagcagcgactctcccggcaacgatttca tccaactacccctatgagattctcaccgatgacaagattgcgtcctgggacagcggttcg aggcaagctctcatcgaacacggcgtgcagtcaagacaggatgtcgacatcaccgagctg tccagccttttccaggaattcgtgcagtcagttgccgaataccgcctcaaccctactgat gccggcgcctgtgtcaaagagatcctcggcccggaaacgaaggaggttattaaagattct tactcgttcgagccacacacgctcttgctggacacgataaccatcatcatggacaaccaa cccgacctttttatcccagaatttcgggacttcctcattgcgacggccatatcgccgacg ctcatccgccaagtgctggatgcccctcttcttcagaaactcggccttatccgggaggtt tttggcaagatggccattcgtcactccaccaacatgctttaccggcaggccaactacaac ctgctgagagaagagtcggaaggttactcaaaactggtgaccgagctattttcatgcgtt gatgactacgacacacccacgacaagggaggccgaggctgctttcgagaagatcaagggg cttattggaacctttgatctcgatgttggcagagtgcttgacgtcgccctcgatgttcac gccacgtctctagtcaaagccagcaagttcttcgtgaagctcttgcgcgtcagttcatgg tggcctcggagtaacacgcctttcgatgccatcgttcagggtggtcttcccgactgggct cttcctctcccctccgaactggatgagtctgctattgccgaggtgaggcgccaaagggac atcgaattctgggaaagagcacgggaaaatcagatccaggcctttttcgagctcggtggc cgacgagcgtcagagcaggatctcgagcgcgctgcagccgatactgctggcgccgcgact gaaggcgaggccgtgagatcgtggatcacggccaccctacgatccagggatacgaccacc agaccgaaagcagcctcgaaacctgaccaggcggaaggcgcggacaagaaggaagaagat gagccccatgagcaaaagggtgccctggtcatcagccttttgaccatcggggccatcccc gaagctctcttcctgatcggccgctggccctggctgctacaaggctacaccgacatcaca agccgggtgaacaggatcttggagtattccatcgacaaactctaccaagcaacccgaccc accacaacatcctccatggcgtgccccccgaagaaggtggccgattcggaccagagcggc gtcacaaaaggttcagtccggcgatccgaaatccccattcgaaaatctatgcgatggcca tggccagatggccgcctcggcgtcagtgatcagcactacaggttctactgggacgaatgg tccgacaacgttccagtctgccaaacagtcgacgacgtattcaccctttcctcgtcgctt ctcaacattgcaggcgtcaacattggcaaaagcgagcagctccttgtcatgttggcgagc attggacagaagagcctggcagaggatcagtcgaaacacaacctggaccggtggcaggac ctcctccgccgtatcctggtgcctgctctgagcacgtcaaagggtgctcccgcgacagcc aaccttgtctggtctctgctgaaacagtaccctattgctactcggtatagcatctacgca gactggttcgaaggggcccccaaccgaggctcggaagtacgtcgagctgccatggtcaag gcctttgccgacacgaagtctaaggcacaaggtgtcatgaaacgtatctctaaggataat gctgtggagatgggaagagccctcgcaaaacttacgcattcctctcccggcattgttttc aaggtcgcactcgagctaatgatgtcttacggcaatctgagcgacgtcttcgcagacaat cagcggagtcgtacacaggcatcctacatcctgtccatcagtccatggctgcttgagctg tcgaagctcacgggcaagctcttcaagcgttatcgagagctggatgcgacacccatcctt cgctatgtgcatgaccagctgctacatggtaactcgacagatttgatcatcctctcggag ttggttgatgcaatgggcggtatcgtcaacacagccgatatcggatatgacgaagtcatc gccatgtccggcatggccttgcttcagcgacgaacgctgatcagccttcaagatcgtcgc tttgaaccagctgtcattgcgagcgcgaaacgcctgacgcatgcccttgttgactctcgc ctagctggacgtctgctagttaacatcgcccagttcagacagtctgctactttcagactc tcggacgacggcgcgcatgtcaaatacctttcgtcacttatggacaacagtcaccagatc ctggttcagtatcttgatctcttgcgcgcgaaccttgaacctgccgaatttgaccgactc gtgcccagcatcagccaactcatggcagaattcggtctcgacgctagcttcgccttctcc attggccgcgagagtcttgctgctcaaatcttctccaaaccaacaaccgcgccaaaacaa agttcgcaatcagcgccagatgctgaaggcgatgtgtccatgggcgatgatgcgatagcc accgagcctgcctcggacaccacgaaatccgagacacccgctccggaagcgccaggggaa gctcatgttactgcggccactagttttgatgcattgaatcccattgtcgaatcccttcgc tcaacaacaccagaaagcgcctggcaaaagatcagtattgaattctttgccattttctgg gcccttcagctcggtgatcttggggttccttgggcaccttaccatgctcagcaagctcgt ctgcaagaacagtaccggcaagtcacgaaagatcgcaagcttttgcaagcccagaagagt gcaaaacaaaaggaactgaaggacaccatggacactttcattaaggaaagcacccaacag tccgagagagtcgccaaggcaaaggtcctcatcaccaagcgtatggacacctggttcatg ggtgagccgctgaaacctaacggtgtttctgatgccatcctcgaacgatgtctccttcct cgcatcattctctccaagatcgattccgagtactcttttgccctcatcaagtacatccat gaactttcgtgccctaacttccgtctcatggcgctgtacgaccgcctcttcaaggccaac aggctgcgcggcatgctcttcacttgcactgtacaggagggcgtgtacctgggtcacttc ttccacctcatactgcgcgagctcaacaaatggcacaagtccagcgccgactacgaaaag gaggccattggcaagagcaagaggtctggtggctaccttgggtttgcgactgcattcgat gacgaaggtcatccgacatcccacctcgaccacgcagagttccaggacgtgctatatggg tggcacaaaaacatcaacttggccctcaaggcctgtctttctggcaccgaatggactcac atccgcaacgccatctcattcttaaccgaggcccacgaggacttccccgcggtcacgttc atgggcacccaactccagagccagcttaagactatcgtgacacgcgaaaagaatctcaga ggcgatctgtggcttacggcacagcgcgtcctgggcaacatggctaagatggaaaagact tggattgcaccgcaagccttccggacaaacttgtccacgcaaagcgctgctcaaggcaat gaggacgagcaagcatccagctcaggcggtagtctccgagccactgcaccagagtttcga ccctcacctcagaacgaggacggcgaagtgcaggatggaaaagcttcttttccgcagcgt tcgacgtcgactcgaagggatgccaaaggtactcctcagtctaatcagagggattctccc cggctaccggtttccacgccgagtggcccgaagcccatgcatggcgcgttatctcacaac cggtcatctacaccgaacccatcggagacgctgcctcatgctccgggttcatcgaacagg gatccaagacacccgaatatgccatcaagccgaaacgcgtccagtcttccccgcggacca ggtcttccacagcgaccccctggccctatcccagaacaccagccattgaatcgctttaca ccagcaggacctaatgatcgccgagatgtcagggaccatagagacccccgcgcgcccaga gacagccgagatgcccgcgaatcccgagaccaacgcgacaccagagactccaaggagccc aagggtggagacgtttctcgacaagaaaatagccgtgagaactcaagacctgagcgccgt ggcccagatgtaccttcgagagatagtggtcggctgtccgaaggcgatcgaccccctcgc cgcgaccatcttcaaagcggtcgagaagccgaaacgccgaaggataggttgccgcagagc accaaccaaggccctgacgtcgacaggtctggtcgtgaggctgggacacccgtgggtggc tctacggcagcaatcgagccgcccatcaatcctgcgcgtgcagccttgtttcagaacgac accccctcccgtaccgagcgacccgatcgtgaacgatctcgagcgcgggacggtgaacaa agaggagcgcagcgtcatcaagggccggaagggccggagcatgatcgttcagaaatcatg aaccttgagcgacccgttctgttcggcgatgggcgacaggagccattgccccgacaaccg cgcgacgatcctcgtgaacgagatcgtgcaccgcgaaaagactcacctgcacgaggtggc cgtgtccaccccgaccgactttcctcagatcccttcagagacgcggtccgggaggagcag ttcggccgccctactcatcctacagatgcccggaaccctaggaacccacgggaacccaga gaccccagagaccccagagaccccagagaccccagagaccccagggatcacagaacggac gattccagagcttcgttccaaagaggccctgagagggacagtgcatttagtggctcagac agcaacaccacgcgggatgccttcctttccagggccgaacgcgacaatgggcggcccaag caagacgaccaatacggacgcctcaacagcaactatccgattgcctcagtcgttgatgcc ccttcaggccctagagggcgaggcgcacgaccgaacccgaggaacaacttcaacacaccg cctccaccaccgccccgcggtgatggtcgccttcctcgtaccggtagccccggcgcatcc actactgatgatcgacaccctccggcgggaccgtcgtcaggccgaggacatcgcagtcag aatgcctcgggttctacacccaactcgaatgcggttgctcccggcgtgcatcctgatcgt ttggcacagatgggtccaccgccacctgtgtccgttggggacgctcatttacgtcaaccc acaagcaccccagatcggccgctgcctttgggtcaaggatcccatcatatcccttctggg aacttcaacgggccgacccctgactttgcaactcccaccgggcccgcctcaggaggtggc cgaaagcagggtggaagaagacagcttgagggtatcaacagcacactgcaacaggctcaa ggcagacctgaccctatcaagggtacgaccatccgaggcaggagcagtcggactaatcta gccaactcggatgctcagattctgacgggagggtcgccggtgtcgacgccagcccacgaa gagtaccaggattctcttcagtcgtctgacaagaggccctatgagggcgacgatcatggc cggggggagcacgagcgcggtcgtagggagcgcgatcgctctgaacgatctggtcgacca tctaggagaagcagcagagagcgtcagcgtagccctggaggccacgagcgggagggcaag gacagtcgctcacaccgggaccgacgttcgggcgctgcaggccatggctcgtcctctcga gacgagcatgagcccagacgttctacgcgtgatccgagtggcggccacccccgagagtcg cagacaggcgcgctgcctccgaacaatagggacggcgccccccgcgattctcgtcatcga ggcgatcggggtgatatgggaccaggaggtctcgtggcggaggagtggaacgggagtgcc tcaaggcaccaacggagcggacagagagactctgtgctcagaccgccggacgatcgtcgc gacccgcgggacaacagcaggaaacggaggagtgaggacgcgaacgggttctcagtggaa aagaggcagaggcgttag

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