KEGG   Verticillium alfalfae: VDBG_01172
Entry
VDBG_01172        CDS       T02227                                 
Name
(RefSeq) coatomer subunit beta-1
  KO
K17302  coatomer subunit beta'
Organism
val  Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:val00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:val04131]
    VDBG_01172
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:val04147]
    VDBG_01172
Membrane trafficking [BR:val04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    VDBG_01172
Exosome [BR:val04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   VDBG_01172
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_RIG_2nd WD40_MABP1-WDR62_1st Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_WDR19_1st PEP5_VPS11_N Beta-prop_IFT122_1st Beta-prop_HPS5 Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_WDR75_2nd Beta-prop_DCAF12 HEAT_GCN1 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 9531073
NCBI-ProteinID: XP_003009489
UniProt: C9S5J9
LinkDB
AA seq 837 aa
MRIDVKRQLFARSERVKGIDFHPQEPWILTTLYSGHVYIWSYETQQIVKTFELTDVPVRA
GRFIARKNWIVCGSDDFQLRVYNYNTSEKITSFEAHPDYIRAIAVHPTQPFVLTASDDMT
IKLWDWEKGWKCVRVFEGHGHYVMGLAINPKDTNTFASACLDRTVKIWSLGSSTANFTLE
AHETKGVNYVDYYPHSDKPYLLTTSDDRTVKVWDYTTKSLIATLEGHTNNVSWACYHPEL
PVIISGSEDGTVRLWHANTYRFEQVLNYGLERAWCVSYQKGKQGVAVGFDDGLVVVKLGR
EEPAVSMDASGKLIWARHNEVVSSIIKGGDASVKDNTPISLPTKDLGSCEVYPQTLLHSP
NGRFVAVCGDGEYIIYTALAWRNKAFGSALDFVWGAKENSNDFAIRESATSVKVYKNFTE
KTGGLDVGFQAEGLSGGVLLGVKGQGGVSFFDWASGGLVRRIEVEPRQVYWSDSGELVTL
ACEDSFYVLRFSREAYNEALQNGEADEDGVEAAFEVITDINESTNRLNYLVGDQTYTVSH
FDQPMYILGYIQRDSRIYLADKDVGVTSFALSLPVLEYQTLVLRGDMETAEELLSSVPQD
QLNKIARFLEGQGHKELALEVATDSEHKFELALGLNQLDIALELAREADVEHKWKTVGDA
ALTAWDVALAQECFTHAKDLGSLLLLYSSTADREGLTKLAEQAEAAGAHNVAFSAQWLAG
NIEGCVETLIRTGRISEAVLFSQTYKPSLTTGVVAQWKESLDKSKKGRVSKLLGVPTEDE
DLFPEWDEWLRLEREGGAETAAPVAKTNGNGAESVADAASEDDDEAAEEEAEASASE
NT seq 2514 nt   +upstreamnt  +downstreamnt
atgaggattgacgtgaagaggcaattgttcgcccgcagcgagcgggtcaagggcattgat
ttccaccctcaagagccatggatcctgacgaccctctactctggccacgtctacatctgg
tcgtacgagacgcaacagatcgtcaagacctttgagctcaccgatgtccccgtccgcgcc
ggtcgcttcatcgcgaggaagaactggattgtctgcggctctgatgatttccaattgcgc
gtctacaactacaacacgtccgagaagatcacctccttcgaagcccaccccgactatatc
cgcgccattgctgttcacccgacgcagcccttcgtgcttactgcatccgatgacatgacc
atcaagctctgggactgggagaagggatggaagtgcgtccgcgttttcgagggccacggc
cactacgtcatgggtctcgccatcaaccccaaggataccaacacgttcgcctcggcctgt
ctcgatcgcactgtcaagatctggagcctgggctcatccaccgcaaacttcactctcgag
gcgcacgagaccaagggtgtcaactatgtcgactactatccccattccgacaagccatac
cttctcaccacctcggatgaccgcaccgtcaaggtgtgggactacaccaccaagtcgcta
attgccacgctggagggccacacaaacaacgtctcctgggcttgctaccaccctgagctt
cccgtcattatctccggttccgaggatggtaccgtgcggttatggcacgccaacacgtac
cgttttgagcaggtgctcaactacggcctcgaacgcgcctggtgtgtttcctaccagaag
ggcaagcagggcgtggctgtgggtttcgacgacggtctcgtcgtcgtgaagctcggtcgc
gaggagccggccgtgtcgatggacgcctctggcaagctcatctgggccagacacaacgag
gttgtgtcttcaatcatcaagggcggcgacgcctccgtcaaggataacacgcccatcagc
ttgcccaccaaggatctcggcagctgcgaggtctatccgcaaaccctccttcactcgccg
aacggtcgatttgttgccgtgtgcggtgacggcgaatacatcatctacactgcgctggcg
tggaggaataaggctttcggctctgcgctggactttgtctggggcgccaaggagaacagc
aacgactttgccattcgggaatcggccacgagcgtgaaggtgtacaagaacttcacggag
aagacgggtggtctcgacgtcggtttccaggcagagggcctcagcggtggcgtcctgctc
ggtgtcaagggccagggcggtgtgtccttctttgactgggccagcggcggcctcgtcagg
cgaattgaggtcgagccgagacaggtctactggtccgacagtggcgagctggtcaccttg
gcctgcgaggattcgttctacgtcctgcgcttctcgcgtgaagcatacaatgaggcgctg
cagaatggcgaggctgacgaggatggtgtcgaggccgcattcgaggttatcactgacatc
aacgagagcacaaaccgcttgaactacctcgttggcgaccagacgtacacggtgtctcat
ttcgaccagcccatgtacatcctcggctacatccagcgcgactcgcgcatctaccttgcc
gataaagacgtcggcgtcacctccttcgccctgtcgctccctgtgcttgagtaccagacg
cttgtgctgcgcggtgacatggagacggctgaggaactcctttccagcgtacctcaggac
cagcttaacaagattgcgcgattcctcgagggccagggtcacaaggagcttgcgctggag
gtggcgacggactcggagcacaagtttgagctggcgctcggactcaaccagctggacatt
gcgctcgagctcgccagagaggcggacgtcgagcacaagtggaagacggtgggtgacgct
gccctcactgcgtgggacgtcgcccttgcccaggagtgctttacgcacgccaaggacctt
ggttcgctgctgctgctctactcttcgacggcggaccgcgagggcctcacgaagctggcg
gaacaggccgaggcggcgggcgcgcacaacgttgcctttagcgcgcaatggctggccggc
aacatcgagggctgcgttgagacacttatccgaacaggcaggatatcagaggccgtgctc
ttctctcagacgtacaagcccagtctgacaacgggcgttgtggcgcagtggaaggagagc
ctcgacaagagcaagaagggccgcgtgtcgaagctgctcggagtacctacggaggatgag
gacctcttccccgagtgggatgagtggctacgactggagcgtgagggtggtgcggagacg
gcagcccccgtggccaagacaaacggcaacggcgccgagtcggttgcggacgcggcgtca
gaggacgacgatgaagccgccgaggaggaggccgaagcttcggctagcgagtag

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