KEGG   Verticillium alfalfae: VDBG_01185
Entry
VDBG_01185        CDS       T02227                                 
Name
(RefSeq) DNA damage-binding protein 1b
  KO
K10610  DNA damage-binding protein 1
Organism
val  Verticillium alfalfae
Pathway
val03420  Nucleotide excision repair
val04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    VDBG_01185
  09124 Replication and repair
   03420 Nucleotide excision repair
    VDBG_01185
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:val04121]
    VDBG_01185
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_01185
Ubiquitin system [BR:val04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     VDBG_01185
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      VDBG_01185
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      VDBG_01185
SSDB
Motif
Pfam: Beta-prop_RSE1_1st CPSF_A Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 9531087
NCBI-ProteinID: XP_003009502
UniProt: C9S5L2
LinkDB
AA seq 1119 aa
MSYIVPIHRPSSIRLAISSRLWPDEDVLVTAKVNRLEISRPTSEGLTLLSSSVVCGTITL
LQTLRPKASETDILFVGTDLFHYFTARWDPTQGKLVTEQVIQDIAEPHMREAQSQDKCLV
DPAGRFVAMHLWEGVMNIMQLGTRKGANLRLDKDWAQVRLSELFMKASTFVPTETGHPTI
AFLYQNSIDREDAHLAVYRLMEDGNTNVSKFDPLKNRELELEIPDPFARTLIPVSIVESD
VKRYHRRDTTNASAQLGGLIVAGETMLIYVDTLTKVKISKALDEPRIFVSWAKYDVTRYL
LADDYGNLHLLTLEVDGVIVTGLSLKTIGKTSRASCLVYMGNEILFLGSHHGDSQLFTLD
LCAQTIRLIQTIPNIAPILDFSIMDLGNAGDSGVGNAFSSGQARIVAGCGVHHNGSLRSI
RSSVGLEDIGILDGIQDVRGLFSLKSYGSEKVDTLVVSFITETRVFKFDAYGSVEELADF
QGLTLDQPTLFAGSLANGHTLQITASSALLLDSESSVTINSWTSSNGGSIVNASVNEKAS
TGRRYWGATAARSRAFTHRETFPDIGAIGFWSTGSVCGHQPRNTASTAWGKASNRTTTTS
LFLGISLWSSCTRLSSQAPRYSFLLRTAKWFQSTSQKMTILSRRGKVSRWGAGRQACMCC
RDRVPLGRIIYSAATAEDVTHIAPFDSEGFPDAIFLATDKNVRIANVDTERRTHVNPLHI
GETVRRVAYSPALKAFGIGTIRKELLHDEEIVSSAFQLVDEIVLGKVGRPFALGGEASVE
LVEAVIRAELDDSTGQPAERFIIGTSYLADPDVNDSGDVKGRILVLGVDSDRNPYLIVSH
ELKGACRCLGVMGDKLVAGLSKTVVVYDYIEDSTTSGKLEKLTTFRPSTFPVDLDISGNM
IGVADLMQSMTLVEFVPAKDGRKAKLIERARHFEYIWATAVCSLGEESWLEADAQGNLMI
LERQPDAPTEHDQKQMRTTSEMHLGEQVNKIRPLQITATESDIIVPKAFLATVDGSLYVL
ANISAEYQSILLPFQERLAGIVRYLGQAAPEDNEGPSFSQWRGFRNAKRMAGAPFRFVDG
ELIERFLDLDELRQEAVVEGLGPSVEAMRNMVEELRRMH
NT seq 3360 nt   +upstreamnt  +downstreamnt
atgtcgtacattgtccccattcaccggcccagcagcattcgcctggccatttcaagccgc
ctgtggccagacgaggatgtgctggttactgccaaggtcaatcggcttgagatctcacgc
cccacctcagaaggcttgactctgttgagctcatccgtcgtttgcggcaccatcaccctc
cttcaaaccctccgacccaaagcatccgagaccgacattctgttcgtcggcaccgatctc
ttccactacttcactgcgcgatgggaccccacacagggcaagctcgtcacagagcaggtc
attcaggacattgcagagccgcacatgcgcgaggcccagagccaggacaagtgccttgtc
gatcccgcgggcaggttcgtcgccatgcacctgtgggagggcgtcatgaacatcatgcaa
ctgggcacgcgcaagggcgcaaacttgaggcttgataaagactgggctcaggttcgcctc
tccgaactgttcatgaaggcaagcaccttcgtgcccacggagacgggacatccgaccatc
gcctttctctaccagaattccatcgatagggaggatgcgcatctggccgtctacaggctc
atggaggacggcaacaccaacgtttccaagttcgaccctttgaagaaccgggagctcgag
ctcgagattcccgacccgttcgccagaacactcatcccagtgtcgatagtcgaatcagac
gtgaagcgttaccatcgccgcgacacaacaaatgccagcgcgcagcttggaggattgatt
gtcgctggcgagacaatgcttatctatgttgataccctgacgaaggtcaagattagcaag
gcactcgacgaacccaggatcttcgtttcgtgggccaagtacgatgttacacgatacctt
ctcgccgacgactacggaaacctacacctgctgacgctcgaggtcgacggcgtcatcgtg
actggactgtcgctcaagacgattggaaagacatcacgagcttcgtgtctggtctatatg
ggcaacgagattctgttcctgggatcacaccatggggattcccagctcttcacgcttgac
ctgtgcgctcagacaatacggctgatccaaacaataccaaacatcgccccaatcctcgat
ttctccattatggacctgggcaacgccggcgacagtggggttggaaacgctttctcgtct
ggacaggcccgcattgtggcgggctgcggtgtgcaccataacggtagcctgaggagcatc
cgaagcagtgtcggcttggaggacattggaatattagatggcatacaggatgtccgtggt
ctattctcgctcaagtcatatgggtctgaaaaggttgacacgcttgtcgtctcgttcata
acagagacgagggtcttcaaattcgatgcctacggcagcgtcgaagagctggcggacttc
cagggtctcacacttgaccagccgactttgttcgcaggttcattagccaacggccacacg
ctgcaaattacggcttcctccgcgcttcttctagactcggaaagcagtgttacgataaat
tcctggacgtcatccaacgggggaagtatcgtcaatgcttctgtcaacgagaaagcaagc
actgggcgacggtattggggggcgacggcagccagatctcgtgcattcacgcatcgcgag
actttccctgatatcggcgctattggcttttggtcgacaggctccgtgtgcgggcatcaa
cctcggaacactgcaagcactgcatgggggaaagcatcaaacagaacgacgacaacgtct
ctgttcctagggatctcgctttggtccagctgcacccgcctcagctcgcaggccccacgc
tattcgtttctcttgaggacggccaagtggtttcaatcaacgtctcaaaagatgactatt
ctctcacggcgaggaaaagtgtcacgttggggagcagggaggcaggcttgcatgtgctgc
cgcgaccgggtgcccctgggccggatcatctactcggctgccaccgccgaggacgtgact
cacattgcgccgtttgattctgagggttttcccgatgccatctttttggctactgacaag
aatgtccgtatcgccaacgtggataccgaacgccggactcacgtcaacccccttcatatc
ggtgagacggtgcggcgggtggcttactctccggcactgaaggcgttcggcatcggcacc
atccgaaaagagcttctgcacgacgaagagattgtctcaagtgccttccagctcgtagac
gagattgtgctcggtaaggtcggcaggccctttgcccttggcggagaagcctctgtggag
ctggttgaggctgtgattcgagccgaactcgacgacagtacagggcagcccgccgagaga
ttcataattggcacaagctatctcgcagaccctgacgtcaacgatagtggcgacgtcaag
ggtcggattttggtgcttggtgtagactcggacaggaacccgtacctcatcgtcagccac
gaactgaagggtgcttgccgatgcctgggggtgatgggagacaagctcgtggcgggcttg
agcaagacggtggtagtctacgactacatcgaggattcgacgacatctggaaagcttgag
aagctgacgacattccggccctcgacatttcccgttgatctcgacatatccggcaacatg
attggagtggctgatttaatgcagtccatgaccctggtcgaatttgtaccagcaaaagac
ggccgcaaggccaaactaatagagagggcgcgacactttgaatacatttgggccacagca
gtgtgcagcttgggcgaggaatcctggctggaggcggacgcgcagggaaacctcatgatt
ttggaacgtcagccggacgcgccgactgagcacgatcagaagcagatgcgcacaacgagc
gagatgcacctgggcgagcaggtgaataagatccgcccgctccagattacggcgacagag
agcgacattattgtcccaaaggccttcctcgcaacggtcgacggttctctctatgtcctt
gccaatatcagtgctgagtaccagagcatcctgctgcccttccaggaacgactggctggg
atcgtgcgctacctcggccaagccgcgcccgaagacaacgagggaccctcgtttagccaa
tggcggggattcagaaacgcaaagaggatggcgggagcgccgttcagatttgtggacgga
gagctgattgagcggttcttggacttggatgaacttagacaagaagctgttgtggaggga
ttgggaccgtctgtcgaagcgatgcggaacatggttgaagagctcagaaggatgcactag

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