Verticillium alfalfae: VDBG_01550
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Entry
VDBG_01550 CDS
T02227
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
val
Verticillium alfalfae
Pathway
val03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDBG_01550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
val03041
]
VDBG_01550
03009 Ribosome biogenesis [BR:
val03009
]
VDBG_01550
Enzymes [BR:
val01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VDBG_01550
Spliceosome [BR:
val03041
]
Complex A
U2 snRNP components
U2 related factors
VDBG_01550
Complex B
VDBG_01550
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
VDBG_01550
Ribosome biogenesis [BR:
val03009
]
Eukaryotic type
90S particles
Helicases
VDBG_01550
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
SRP54
T2SSE
Flavi_DEAD
AAA_19
ResIII
nSTAND3
AAA_23
NB-ARC
Motif
Other DBs
NCBI-GeneID:
9533445
NCBI-ProteinID:
XP_003007362
UniProt:
C9SAJ3
LinkDB
All DBs
AA seq
770 aa
AA seq
DB search
MADANGKRHSSDDGQAAYERRKKMKTDSPDIKMEKYESIDDKVKANPYLAHMNNGGGDEP
FADFETRNTTAKQAAAVEDLTHNAFTGKEHTKKYFDILRTRRDLPVHKQRQEFLDKYHST
QILVFVGETGSGKTTQIPQYVLYDELPQRNRKLVACTQPRRVAAMSVAQRVADELDVPLG
DEVGYSIRFEDKTSPRTVLKYMTDGMLLREAMHDHQMSRYSCIILDEAHERTLATDILMA
LLKNVAQRRPDLKIIVMSATLDAQKFQRYFNDAPLLAVPGRTFPVEIFYTPEPEKDYVEA
AIRTVLQIHASEGEGDILVFLTGEEEIEDACRKINLEADEMVREIDAGPLAVYPLYGTLP
PGQQQRIFDKAPAPFKPGGRPGRKCIIATNIAETSLTIDGIVYVVDPGFSKQKIYNPRIR
VESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTEQAFKKELIEQTYPEILRSNLANTVL
ELKKLGVEDLVHFDLMDPPAPETMMRALEELNYLACLDDEGELTALGSKASEFPLDPALA
VMLISSPEFYCSNEILSITSLLSVPQIWMRPAASRRRADEMKAHFTHPEGDHLTLLNAYH
AFKGEIQKGADVKRWCHDHFLSYRHLQSADNVRAQLKRIMETHEVELMSTPFEDKNYYNN
IRRAMLAGFFMQVAFRESSGKVYRTIKDDQAVMLHPSTVLKTDYEWVVYNEFVLTSKQYI
RTCTGVRPEWLLEIAPTYYDLSTFTKGDARSALVRASEKKRRKEAMKAGR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgccaacggaaagcgccacagctctgacgacggtcaagctgcgtacgagagg
cggaagaagatgaagacggacagccccgacatcaaaatggaaaaatacgaaagcatcgac
gacaaggtcaaggccaatccctaccttgcccacatgaacaacgggggcggcgacgagccc
tttgccgacttcgagacccgtaacaccacagccaagcaggccgcggctgttgaggacctc
acccacaacgccttcaccggaaaggagcatacgaagaaatatttcgatattctgcgtacg
cgtcgcgaccttccagttcataagcaacgccaggagtttcttgacaagtaccactcgaca
cagatcctcgtcttcgttggtgagacaggttctggcaagacgacacagatcccgcagtat
gtcctctacgacgagttgccccagcgcaacaggaaactcgtcgcctgcacacaaccgcgt
cgtgtggctgccatgtccgttgctcagcgtgtcgccgacgagctcgatgtgcctctaggt
gacgaggttggttacagcatccgtttcgaggacaagaccagccccagaacagtgctgaag
tacatgactgacggcatgctgctccgcgaggccatgcacgaccatcaaatgtcccgctac
agctgcatcattcttgacgaggcccacgagcgcacgctagccaccgatatcctcatggcc
ctgttgaagaatgtcgcccagcgccgtcctgatctgaagatcatcgtcatgtctgccacc
ctcgatgcccaaaagttccaacgctacttcaacgacgccccccttcttgcagttccgggt
cgcaccttccctgtcgagatattttacacccctgaaccagaaaaagactacgtcgaagct
gccattcgcactgttctgcagattcacgcctccgaaggcgagggagatatccttgttttc
ctgacgggcgaggaggagattgaagacgcgtgtcgcaaaatcaacctcgaggctgacgaa
atggttcgcgagattgacgccgggccgctcgctgtttatccgctttacggcaccctgccg
cctggtcagcagcaacgcatcttcgataaggccccagcaccattcaagcctggtggccgt
cccggccgcaagtgcatcattgcgacaaacattgcagagacgtcactgaccattgatggt
atcgtatacgttgttgaccccggtttcagcaaacaaaagatctacaacccccgcatccgc
gtcgagtctcttctcgtgtcccctatctccaaggcgtccgcgcagcagcgtgctggtcgt
gctggccgaacaaaacccggcaagtgcttccgtctatacacggagcaggccttcaagaag
gagctcattgagcagacgtaccctgagattctgcgttcgaacctggccaacactgttctc
gagctgaagaagctgggcgtcgaggatcttgtccactttgacctcatggatccccctgcg
ccagagacgatgatgcgcgcccttgaggaactcaactacctggcatgccttgacgacgag
ggcgagctcacggccttgggcagcaaggcctccgagttccccctcgacccagcacttgcc
gtcatgctcatatcatcgcccgagttctattgctccaacgagatcctttccatcacatcc
ctcctgtcagtaccccagatctggatgcgccctgccgctagccggcgtcgcgccgacgag
atgaaggcacactttacgcatcccgagggcgatcacctgacgctcctcaatgcctatcac
gccttcaagggtgaaatccagaagggcgcggacgtcaagcgctggtgtcacgatcacttc
ctgtcctaccgtcaccttcagagtgccgacaatgtgcgcgcccagctcaaacgcatcatg
gagacgcacgaggttgagctcatgtcgacgccgttcgaagacaagaactactacaacaac
attcgtcgggctatgctcgcaggcttcttcatgcaggtcgctttccgtgagagctctggc
aaggtgtatcgtaccatcaaggatgaccaagccgtcatgcttcacccgtccacagtcctc
aagacggactacgagtgggtagtctacaacgagttcgtactcacctccaaacagtacatc
cgtacctgcaccggcgtacgcccagagtggcttcttgaaatcgcacccacctattatgat
ctcagcacatttaccaagggtgacgcaaggtcagcgttggtccgcgcgtcagagaagaag
cgccgcaaggaagctatgaaggcgggacggtaa
DBGET
integrated database retrieval system
