Verticillium alfalfae: VDBG_01916 Help Entry VDBG_01916        CDS       T02227                                  Name (RefSeq) antiviral helicase SKI2   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism val  Verticillium alfalfae Pathway val03018   RNA degradation Brite KEGG Orthology (KO) [BR:val00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     VDBG_01916  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:val03019]     VDBG_01916 Enzymes [BR:val01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      VDBG_01916 Messenger RNA biogenesis [BR:val03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      VDBG_01916   mRNA degradation factors    3'-5' decay     Ski complex      VDBG_01916 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk DEXQc_Suv3 Helicase_C ResIII Ski2_beta-barrel Motif Other DBs NCBI-GeneID:  9535355 NCBI-ProteinID:  XP_003007728 UniProt:  C9SBS3 LinkDB All DBs AA seq 1242 aa AA seqDB search MTTDLAEAIQGLRLDEKDVNIDDILFEQRPRKRVRQQSSELKSNLEKDFLSPSTSFSNDW LNRLQQLAPPQTRTVTRFQRHGLEGRVTGYKNVTVPANSATAKNSTSFSRKPASRAEFVR GAAGFFPFAPGGLEGVESAAALEDQLHRTSGVDAGSSNKLERVIKLGVDGSLLEVAPGLS RGINFSSKKNDQDEAKAVEQELDEEPEQAPDAQNEETAARADGDDAHTPEEDDSEDIDAI LPVEFPALEPHGTLAASSARKAGREWAHMVDINRDITNFRELVPDMARDWPFELDTFQKE AIYHLENGDSVFVAAHTSAGKTVVAEYAIALAARHMTKAIYTSPIKALSNQKFRDFRQEF DEVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDLERGVVW EEVIIMLPEHVSLILLSATVPNTHEFASWVGRTKQKDIYVISTPKRPVPLEHYLWAGKDI HKIVTADKKFSEKGWKDANAALQGKEKPKQIESSGNARGGGPPRGGQRGGQRGGPQRGGQ RGGGGQRGGGGGQQRGRGGPPRASHAPGHMGRGGRSGFASAAQDKNIWVHLVQFLKKNTL LPACIFVFSKKRCEQNADALSNQDFCTASEKSAIHMTIEKSVARLKPEDRQLPQIIRLRE LLSRGIAVHHGGLLPIVKEVVEILFAQTLVKVLFATETFAMGLNLPTRTVVFSGYRKHDG HSFRNLLPGEYTQMAGRAGRRGLDPVGSVIIVPPGASDEVPPVVELQKMILGEASKLRSQ FRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKAVKVSEADLAKVKRDSCDT CDKDKVMDVCHQASQDFKELTTSLYSALVKLPIGRKMFSQARLIVYNKDGVRTPGILLAD GASVKGSSSGATLHVCELRTLRETRDSTDLLPFIPAFRKYLTPLPQHKKQIQVKTLHVPI ADVECLTRYTTKGIVPDIFQGGEENLALQEIIEKRQEAVRTASHSPALECDNFVKHFAMC HDQWLIKDHIAQLQLSLSNQNLQLLPDYEQRVLVLKELQFIDDSARILLKGKVACEIHSG DELVLTELILDNVLADYEPAEIAALLSAFVFQEKTDSEPTLTGNLERGKQTIIDISEKIN NVQTIHQVIQSTDDSNDFTSRPRFGLMEVVYEWARGMSFKNITDLTDVLEGTIVRTITRL DETCREVKNAARIIGDPELYQKMQAAQEMIKRDITAVASLYM NT seq 3729 nt NT seq  +upstreamnt  +downstreamnt atgacgacagacttggccgaggccatacaaggtctccgcctcgacgagaaagacgtcaat atcgacgacattctatttgagcaacgtccccgaaagcgtgtgaggcagcagtcgtcagag ctcaaaagcaatctggagaaggacttcctctcgccatccacctccttctccaatgactgg ctcaaccggctccagcagcttgctccgccgcagactcgcaccgtgacccggttccagcgt cacggcctcgagggcagggtcaccggctacaagaacgtcacagtccctgccaacagtgcc acggccaagaactcgacctcgttctcccggaaacccgccagcagggccgagttcgtgcgc ggtgccgctggcttctttccctttgcgcccggcggcctcgagggcgtcgagtcggccgca gcgctcgaggaccagctgcaccgcacgagcggcgtcgacgccgggtcctcgaacaagctc gagagggtcatcaagctcggtgtcgacggcagccttctcgaggttgcccccggtctcagc cgcggtatcaacttttccagcaagaagaatgaccaggacgaggccaaggctgtcgagcag gagctcgacgaggagcctgagcaggcgcctgacgcgcagaatgaagagacggccgccagg gccgatggagacgacgctcacactcctgaggaggacgacagcgaagacatcgatgccatc ttgccggtcgagtttcctgcactcgaaccacacggcacactcgcggcgtccagcgcgcga aaggctggacgcgaatgggcgcacatggtcgatatcaacagggatataaccaattttaga gaactggtgccggacatggcgagagactggccgtttgagcttgacacgttccaaaaggag gccatctaccacctcgagaatggtgactctgtcttcgtggcggcccacacgtcggcaggc aagacggtggttgccgagtacgccatagccttggctgctcggcacatgaccaaggccatc tacacttcgcccatcaaagcgttgagtaaccagaaattccgtgacttccggcaggaattc gacgaggttggtattctcacgggcgatgttcagattaaccctgaagccagctgtctcatc atgacgactgagattcttcgctccatgctgtaccgtggcgctgatctcatccgagacgtc gagtttgtcattttcgacgaagtccactatgtcaacgatctcgaacgtggcgtcgtgtgg gaggaagtcatcatcatgctcccggaacatgtgtccctcatcttgctgtcagctactgtt cccaacacgcacgagtttgcctcttgggtgggccgaacgaagcagaaggatatctatgtc atctctacaccgaaacggccagtacccctggaacactatttatgggccggcaaagacatc cacaagatcgtcacggccgacaaaaagttcagcgaaaagggctggaaggacgccaatgct gctctgcaaggcaaggagaagcccaagcagatcgagagcagcggcaacgctcgcggcggt ggtccgccaagaggaggacagcgaggaggtcagcgcggcgggcctcaacgcggcggccag aggggcggcggcggtcagcgaggcggaggcggcggtcagcagagaggtcgcggtggtcct ccccgtgcgagccatgcaccagggcacatgggccgtggtggacgaagtggattcgcatct gccgctcaagacaagaacatctgggttcacctcgtccagttcctcaagaagaacacgctg ctgcccgcttgtatcttcgtcttctcaaagaagcggtgcgagcagaatgctgatgcgctc agcaaccaggatttctgtacagcatccgagaaaagtgccatccacatgacgatcgagaag tcagttgctcggctgaagccggaggatcgtcaactaccacaaatcatccggcttcgtgag cttctatctcgtggcatcgctgtccatcatggtggtctgcttcccattgttaaggaggtt gtcgagattctgttcgctcagaccctggtcaaggttctcttcgccacggagacttttgcc atgggtctcaacttgcctacgaggactgtcgtcttctccggctaccgcaagcacgatgga cactcgttccgcaatctcctccccggcgagtacacgcagatggccggtcgagctggacgc cgaggtctcgaccccgtcggctcggttatcattgtgccgccgggagcctccgacgaggta cctcccgtggttgagctacagaagatgattctgggtgaggcgtctaagctgcgctctcaa ttccgtctaacttataacatgatactcaacctgctgcgagtggaggccctcaagatcgag gagatgatcaaacgcagtttctcggaacacgcgacgcagcagttgcttcccgagcacgag aaggcagtcaaggtctctgaggccgacttggcgaaggtcaagcgtgattcttgtgacact tgtgacaaggataaggtcatggacgtgtgccatcaggcatcccaggacttcaaagagctc accacaagtctttactccgcactggtcaagctgcctattggtcgcaagatgtttagccag gcacgcctgatcgtctacaacaaggatggtgttcgcaccccgggcatcctccttgccgac ggtgcaagtgttaagggctcctccagtggcgcaacacttcacgtctgtgagctccgaaca ctccgcgagactcgcgactcgacagacctgctgcccttcatcccggccttccgcaaatac ctcactcctcttccacagcacaagaagcagatacaggtcaagactcttcacgttcctatt gctgacgtggagtgtctgactcgttacaccaccaagggcatcgtgcccgatatcttccag ggaggtgaagagaatcttgcactccaggagatcatcgagaagcgtcaggaggctgttcgc actgcttcccattcgcctgcgctggagtgcgataactttgtcaagcacttcgccatgtgt cacgaccagtggcttatcaaggaccacatcgcccagttgcagctgtcgctgtccaaccag aaccttcagctgcttcccgactacgagcagcgcgtcctcgtcctcaaggagctgcagttc attgacgacagcgctcgcatcctgctgaagggcaaggtggcttgtgaaattcattcgggc gatgaattggtgctcacggagctcatccttgacaacgtgctcgcggactacgagccggcc gaaatcgccgcgctcctttcggcgtttgtgttccaggagaagacggacagcgagccgacg ttgacgggcaacctagagaggggcaagcagaccatcatcgacattagcgagaagatcaac aacgtccagacgatccatcaggtcatccagtcgacggacgactcgaacgattttacgtca cggccgcgtttcggcctaatggaggttgtgtatgagtgggcccgtggcatgagcttcaag aacatcaccgacctgaccgatgtgctcgaaggcacgattgtcaggaccatcacccggctt gacgagacgtgccgcgaggtcaagaacgcggctaggatcattggcgaccctgagctctac cagaagatgcaggcggcgcaggagatgatcaagcgagacattacggccgtggcaagtctt tacatgtag

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