Verticillium alfalfae: VDBG_01987
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Entry
VDBG_01987 CDS
T02227
Name
(RefSeq) DNA-(apurinic or apyrimidinic site) lyase
KO
K10772
AP endonuclease 2 [EC:
3.1.11.2
]
Organism
val
Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:
val00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_01987
Enzymes [BR:
val01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
VDBG_01987
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
VDBG_01987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Thioredoxin_13
Motif
Other DBs
NCBI-GeneID:
9535589
NCBI-ProteinID:
XP_003007799
UniProt:
C9SBZ4
LinkDB
All DBs
AA seq
334 aa
AA seq
DB search
MPRITTWNVNGIRNPFGYQPWREKRTFEAMFDILEADIIIFQETKIQRKDLKDDMVLIPG
WDVYFSLPKYKKAGYSGVVIYTRNATCCPIRAEEGIFGVLCPPDSSTKFRDLPKEQQIGG
YPTAEQLSSDIDEATLDSEGRCVILEFPAFVLIGTYSPANRDESRQEFRLGYLSALDARV
RNLVAAGKQVILTGDLNVSRSEIDTINLSEQLRKEDMTMDDWMAIPSRRLFNQLLFEGQV
RGDRDPGREQPVLWDICRCFHPDRKGMFTCWDTKRNTRPANNGARIDYLLCSAGIKDWFI
DSNIQEGLHGSDHCPVYGTLGDTVKVDGQGCPYT
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgaattactacttggaacgtcaatggcatcaggaacccatttgggtatcagcca
tggagggagaaacggacattcgaggccatgttcgacatactggaggcagacataatcatc
ttccaggagacgaagattcagcgtaaagacctcaaggacgacatggttctgattcctggc
tgggacgtttacttcagtcttcccaaatacaaaaaagcaggttactccggggtggtaatc
tacacgcggaatgccacgtgctgccccatacgtgcagaggagggcatctttggcgttctt
tgtcctccagactcaagcaccaaattccgagatttgcctaaagagcaacagattggcggc
tatccaaccgctgagcagctttccagcgacatcgatgaagccacactcgattcagaaggc
cgatgtgtgatcctcgaatttcctgcattcgtgctcattggcacgtacagtcccgccaac
cgcgatgaatcaagacaagagtttcgcctgggctatctctctgcactggatgcgagggtg
cgcaaccttgttgccgcgggtaagcaggtcattttgacaggtgacctgaacgtcagccga
tccgagattgatacgattaacctttctgagcaactgcgcaaagaggacatgacaatggac
gactggatggccattccctcgcgacggctcttcaatcagcttcttttcgagggtcaagtt
cgtggagatcgcgatcctgggcgcgagcaacccgtactttgggatatttgtcgctgcttc
catccagatcgtaaaggcatgtttacgtgttgggataccaagcggaacacgagaccagcc
aacaacggcgcacgcattgattacttgttatgctccgcgggcatcaaagattggttcatc
gactccaacatacaagaaggactccacggctcagatcattgcccagtctatggtactctg
ggggacacggtcaaggttgacggccagggatgtccatacacttga
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