Verticillium alfalfae: VDBG_02195
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Entry
VDBG_02195 CDS
T02227
Name
(RefSeq) exosome complex exonuclease RRP43
KO
K12586
exosome complex component RRP43
Organism
val
Verticillium alfalfae
Pathway
val03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDBG_02195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_02195
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
VDBG_02195
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
9536045
NCBI-ProteinID:
XP_003008007
UniProt:
C9S9M3
LinkDB
All DBs
AA seq
340 aa
AA seq
DB search
MATPQGLPRETFAKLSPHPYLLANLQTPEAAGATTPTRSNGRAPHEARTPNINTSTLTHA
HGSALVRIGDNTVICGIRGEILPTANIPNYRASIRDSDDGGRAELRDYDLLVPNIELATG
SAPQFLPGVPPTNLAQTLSTRVFSLLHSSGLVNADDLRIWHTRPAENTGYSAADDEDDDM
GELEAGERVVIAYWVLYIDIYFISFDGNPFDAAWAAMLAALRNTKLPAARWDQDREIVVC
SRAEQKPLTLSGFPIATSAAVFQGKEPGRFWTLVDPDRLEETLCRENLTVVVTRTAARRS
SSQCPSTAAQRYSRACRRVCGRAESVGVPSCDDLSIMIPQ
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggccacgccccaaggtctcccccgcgagaccttcgccaaactctccccacacccatac
cttctcgccaatcttcagactcccgaagcggcaggcgcaacgacgccgacgcgcagtaac
ggtcgggcgccccacgaagctcgcactcccaacatcaacacgtctactctgacccacgct
cacggcagcgcccttgtccggatcggcgacaacacagtcatctgtggcatccgcggcgag
atcctcccgaccgccaacattcccaactatcgtgcctccatccgcgacagcgacgatggc
ggccgcgccgagctccgagactacgacctcctcgttcctaacattgagctggctaccggc
tccgcaccccaattcctgcccggtgtgcccccgacgaacctcgctcagactttgagcacc
cgtgtcttctcgctccttcactcctctggcctcgtcaacgcggacgacctgaggatatgg
cacacgcgcccagccgagaacacaggctacagcgccgcagatgacgaagacgatgacatg
ggcgagctggaggccggcgagagggtcgtcatcgcgtactgggtgctctacatcgacata
tacttcatctcgttcgacggcaacccgttcgacgccgcctgggccgctatgctagctgca
ctgcggaatacaaagctgccagcggcacggtgggaccaggaccgcgagattgtcgtctgc
tcgcgcgcagagcagaagccgctgacattgtcaggcttccccattgccacttcggctgcc
gtcttccaaggcaaagagcccggccgcttctggacactggtggacccggaccgcctggag
gaaactctgtgtcgcgagaatctgacggttgtcgtgacaagaacggcggcgagacgaagc
tcctctcagtgtccaagcacggcggcacaacgttacagccgagcttgtcggagagtttgt
ggccgtgcagagagcgtgggagttccgtcgtgtgatgacctgagcatcatgataccccaa
taa
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