Verticillium alfalfae: VDBG_02413
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Entry
VDBG_02413 CDS
T02227
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
val
Verticillium alfalfae
Pathway
val00040
Pentose and glucuronate interconversions
val01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
val00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
VDBG_02413
Enzymes [BR:
val01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
VDBG_02413
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
9532783
NCBI-ProteinID:
XP_003008225
UniProt:
C9SA91
LinkDB
All DBs
AA seq
337 aa
AA seq
DB search
MKFNVGLLFVAFASVTSAFPLEYLKIASWDVEGFAKSNPIGVTTGGKGGPTVVATTAAEL
IAAVAGNDPKIVRVKGDITLAARLKVGSNKSLIGVGWSAHITGAGIDVFNGDNVILQNLK
ISYIVDNDCITIRNSTRVWVDHNEFTSDITQGPDAYDGQVDIIRGSDYITVSWNYFHDHW
KSSLIGNNPDFRDIDSGKLHVTYHHNWWKNMGTRGPAGRFGRQHVYNNLYEDFLYQAIHS
RSDNQVLVEGNVFRGKTREALSSYGLVIPEDSPNTCVCGDEELDGYANLGAKNDWGNAGV
NITQVGDFYKADYKFKLTPLKLVPLVTKLGAGVGRIW
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcaacgtgggcctcctcttcgtggccttcgccagcgtcacctctgccttccct
ctcgagtatctcaagattgcctcttgggatgtcgagggtttcgccaagagcaaccccatt
ggcgtgaccactggcggtaagggcggaccgaccgtcgtggccacgacagccgccgagctc
atcgccgccgttgccggcaacgaccccaagatcgttcgcgtcaagggcgacatcaccctg
gctgcacgtctcaaggtcggctccaacaagtcgctcatcggcgttggctggtcggcgcat
atcaccggtgctggtatcgatgtcttcaacggcgacaacgttatcctccagaacctcaag
atcagctacattgtcgacaacgactgcatcactatccgcaactctactcgtgtctgggtt
gatcacaacgagttcacctccgacatcacccagggacctgatgcttacgacggccaagtt
gatattatccgtggatccgactatatcaccgtcagctggaactatttccatgaccactgg
aagtcctcgctgatcggcaacaaccccgatttccgcgacatcgactccggtaagctgcac
gtcacctaccaccacaactggtggaagaacatgggcacgcgcggtcccgccggccgcttc
ggccgccagcacgtctacaacaacctttacgaggacttcctctaccaggccattcactcg
cgctccgacaaccaggtcctcgtcgagggcaacgttttccgcggcaagacccgcgaggcc
ctgagctcctacggcctggtcatccccgaggactcgcccaacacttgtgtctgcggtgac
gaggagctcgacggctatgccaaccttggtgccaagaacgactggggcaacgctggtgtc
aacataacccaggttggcgacttctacaaggccgactacaagttcaagctcaccccgctg
aagctcgtgccgctcgtcacgaagctcggtgccggtgttggacgaatctggtaa
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