Verticillium alfalfae: VDBG_03011
Help
Entry
VDBG_03011 CDS
T02227
Name
(RefSeq) suppressor of stem-loop protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
val
Verticillium alfalfae
Pathway
val03022
Basal transcription factors
val03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VDBG_03011
09124 Replication and repair
03420 Nucleotide excision repair
VDBG_03011
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_03011
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_03011
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VDBG_03011
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VDBG_03011
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Motif
Other DBs
NCBI-GeneID:
9533021
NCBI-ProteinID:
XP_003006872
UniProt:
C9SCT7
LinkDB
All DBs
AA seq
468 aa
AA seq
DB search
MSDSDGDFVESEDDRHRPSRPAGGGKEARKKKKAGKAAAWEVVKRSWETVEEGADGSLDV
EGRAEAEKRRRLLRDTTPLQRGIIRHLVLVLDMSFAMAEKDLLPTRLRLTWRLAREFVKE
YFEQNPISQMGIVGMRDGVAVRVSEMGGNPVEHVEAINKWAEIDPQGSPSLQNALEMCRG
ALFHAPSHGTREVLVVYGALLSSDPGDIHDTIANLLTDRIRVSIVGLAAQVAICEELCRK
TNAGDATQYNIALDEMHYRELLLRTTTPPVTRTQAQSTASLLMMGFPSRTLAPADTTAYC
ACHNTPVREGYLCTRCGTRVCRLPAECPACGLTPHPLHPPRPLLPPPLSRCATGSRSPGP
RAAASRACYSCLAPFPDPPAQRRGHRANGTDGRRRGDAGDEEPAPAPKQKGVSESSRYAC
QVCGNHFCIDCDVFAHEVIHNCPGCQSDARGAVTNGENGTNGAMEVDS
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactccgacggcgactttgtcgagtccgaagacgaccgccacagaccctcgcgg
ccggccggcggcggcaaggaggcgcgcaagaagaaaaaggccggcaaggcggcggcatgg
gaggtcgtcaagcggtcgtgggagacggtcgaggagggcgccgacggcagcctcgacgtc
gaggggcgggccgaggccgagaagcggcggcggctgctgcgcgacacgacgccgctgcag
cgcggcatcatccggcacctcgtgctcgtgctcgacatgagcttcgccatggccgagaag
gacctgctgcccacgcggctgcggctcacgtggcgcctcgcccgcgagtttgtcaaggag
tactttgagcagaaccccatctcgcagatgggcatcgtcggcatgcgcgacggcgtcgcc
gttcgcgtcagcgagatgggcggcaaccccgtcgagcatgtcgaggccatcaacaagtgg
gccgagattgacccgcaggggagcccgagtctgcagaatgcgctcgagatgtgtcgtggt
gccctgttccacgcgccgagccacggcacgagagaggtgctcgtcgtctacggcgccctg
ctgtcgagcgaccccggcgacattcacgacacgatcgcgaacctcctcaccgacaggata
cgcgtgtcgatcgtcgggctcgcggcccaggtggccatctgcgaggagctctgccgcaag
accaacgccggcgacgcgacgcagtacaacatcgccctcgacgagatgcactaccgcgag
ctgctcctccgcacgacgacgccgcccgtgacgcgcacccaggcccagagcacggcctcg
ctcctcatgatgggcttcccctcgcgcaccctcgcccccgccgacacgaccgcctactgc
gcctgccacaacacgcccgtccgcgagggctacctctgcacccgctgcggcacccgcgtc
tgccgcctgcccgccgagtgtcccgcctgcggcctgacacctcatcctctccacccacct
cgcccgctcctaccaccacctctttcccgctgcgcaactgggtcgaggtcccctgggccc
cgcgccgccgcctcgcgcgcctgctactcgtgcctcgcgccctttcccgacccgccggcc
cagcggcggggccacagggccaacggcaccgacggcaggaggcgaggcgacgccggcgac
gaggaaccggcgccggcgccgaagcaaaagggcgtcagcgagagcagtcgctacgcgtgt
caggtgtgcggcaaccacttctgcatcgactgcgatgtctttgcgcacgaggtcatacac
aactgccccggctgtcagagcgacgcgcggggcgctgtcacgaacggagagaacgggacg
aacggggcgatggaggtggacagctga
DBGET
integrated database retrieval system
