KEGG   Verticillium alfalfae: VDBG_03087
Entry
VDBG_03087        CDS       T02227                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
val  Verticillium alfalfae
Pathway
val03030  DNA replication
val03410  Base excision repair
val03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VDBG_03087
   03410 Base excision repair
    VDBG_03087
   03420 Nucleotide excision repair
    VDBG_03087
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:val03032]
    VDBG_03087
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_03087
Enzymes [BR:val01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     VDBG_03087
DNA replication proteins [BR:val03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    VDBG_03087
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      VDBG_03087
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf-DPOE DNA_pol_B DNA_pol_B_exo2 zf_DPOE_2 RNase_H_2 NAPRTase_C
Other DBs
NCBI-GeneID: 9533098
NCBI-ProteinID: XP_003006948
UniProt: C9SD13
LinkDB
AA seq 2076 aa
MPNTSLRRPQKGYRRGGKVAFHGGRSTKPRTFDASSRAEATSADERWERTRLSNTIDEAM
GFARHEGGGRRREGWLVNVQPTAVEDDRNPGGRAALDCYFMEDDGATFKATVDEVEEWLK
RVPATGCVKTIKRIEKEDLKVPNHFAGLPTAVLGAALSQRQRLAGGAQGHLCLLPAEEIR
RNVDVMEAYAEVATRANASFADASDFIVDIREYDVPVPYIRVGKWYFVDSKHGITSVICN
EERLAMADPVVMAYDIETSKLPLKFPDAATDQIMMISYMIDGQGFLITNREIVSEDISDF
EYTPKPEYPGAFMIFNEKDEKNVIERFFEHIKEARPTVIATYNGDFFDWPFVETRASFHG
IDMYQEIGWKKNSEDQYQCSYGVHMDCFHWVNRDSYLPQGSRGLKAVTVAKLGYDPDELD
PELMTPYAAERPQTLAEYSVSDAVATYYLYMKYVHPFVFSLCTILPLGGDDTLRKGTGTL
CEMLLMVQAYERKIVLPNKHMAPKEAFWDGHLLDSETYVGGHVESIEAALRFTIEVEEKK
SMADVENYEEVKAQVAARLQALKETPNRMERPLIYHLDVASMYPNIMTTNRLQPDSMVQE
SDCAACDFNRPGKTCDRRLPWSWRGEYIPAKRDEYNMIRNALESEKFPGKYPNSPMRPFQ
DLSQDEQTALIRKRLQMYSQKIYHKIHDSTIITKEAIICQRENPFYINTVRDFRDRRYDY
KGKAKVWKGKTEALKSSGASSTEVEAAKKMIILFDSLQLAHKVILNSFYGYVMRKGSRWY
SLEMAGVTCLTGATIIQLARGLVERLGRPLELDTDGIWCMLPATFPENFSFKMKGGKKVT
VSYPCVMLNHLVHAKFTNHQYQTLVDEKTFKYETHSDNSIFFEVDGPYKAMVLPTSKEED
KNLKKRYAVFNDDGSLAELKGFEVKRRGELKLIKIFQQQIFKFFLEGTTLAECYTAVAKV
ANRWLDILHSKGASLEDEELMELISENRSMSKTLEEYGSQKSTSITTAKRLADFLGEQMV
KDKGLNCKFIICARPKNAPVTERAVPVAIFSAEEQTKRAYLKKWLKEEPADTDPRALLDW
DYYLERLGSVIQKLITIPAALQKVRNPVPRVPHPDWLQRRINIKDDKMKQKKMTDMFTKG
PLEDITNLNGRGAEDMEDFGTKLLKPKTTQQYADNIQTTFMHQAHNTFTNNWHLLHLKTT
ETPGVVNAYVLIHAKIHTVKIKVSRVVFLNLKSNDMPDVDIAGCEVEQVNHTLPNGHSST
HLFKLMVPEDVYFNEADSFSTLFNHPSVEGVYEKNLPLNIRAVLQLGNICTVDETKDGVL
GKGLDEGFDLVGLMRPLQPKPYLEASPLAYLYISQISAGERQIFGLFSTTTSQAHIVILN
KSRDSGQELPNVSRIYADALKQRGQEAEGTNWQECFPYQEKLNFKITQVTTRRKLHLELG
DIVKKLRKDEVKPLMLVIQSSQRNHLISEVPVLSEFPVLPLKYDTTDSSLPPLGWQTVAA
RRLVGHYLGLGSWVMHLMSLARYGDVPLCNLERDDPRFLIDIAYARRLQNNNVVLWWSAS
PRPDHAGYEKDDVTGPLETVSMPNVNKPGTFASVCIDLEVRNLAINTILTSSLINDLEGA
DSVSFNPAADAGANADEVISFDNAFANAGVLVLREMVKAWWVEACKGNTMADVMVQHLVR
WVESPDSFLYDRALHYYVQMMSRKAFQQLMGDFRKVGSQVIFANSNRLLLQTTKAEVGTA
YAYSNYVIKSIKSKPLFHFIDLEIKEYWDYLVWYDEFNYGGKACQEVVEADNQNLETIMH
WQMSTFLPERLQPTFKNGQRLTQLTPSRKDPNDESALLLGKSFEKPLKKTISNLLAVQKR
ELLHPELAGDYSFPVLPGSHLAAYTDGAGARSGPLLELVKSLMQVLSLDRNITLEARLLR
KELLAMFDVREFSKGATFQNPSASLKMPQLSCDVCTMARDMDFCRDADLLPDQGQTHKPW
RCGFCEAEYDRNTIEERLIAQVEGFAVEWASQDVQCEKCHALRLNEFMEHCVCSGAWVES
VSREDILKKVAVYGNVAKFYGLRMLKEVVEGLKAGL
NT seq 6231 nt   +upstreamnt  +downstreamnt
atgccgaacacatctctgcggcgcccgcaaaagggctaccgccgcggcggcaaagtcgcc
ttccacggcggccgttccacgaaaccccgaaccttcgacgcctcctcccgcgccgaggcc
acctccgccgacgagcgctgggagcgcacccgcctgagcaacacgatcgacgaggccatg
ggcttcgcgcgccacgagggcggcggccggcggcgcgagggctggctcgtcaacgtgcag
cccacggccgtcgaggacgaccggaaccccggcggccgcgccgcgctcgactgttacttc
atggaggacgacggcgcgacgttcaaggcgacggtcgacgaggtcgaggagtggctcaag
cgcgtgccggcgacgggctgcgtcaagacgatcaagaggatcgagaaggaggacctgaag
gtgccgaaccactttgctgggctaccgacggccgttcttggggctgcgctttctcaacgt
caacgacttgctggcggcgcgcagggacatttatgcctattgccggcggaagaaataaga
agaaacgtggatgtgatggaggcgtatgcagaggttgccacacgagcgaatgcttctttt
gccgatgcgagcgactttatagtcgatattagagagtacgatgtgcccgtaccatatata
cgagtgggaaaatggtacttcgtggactcgaaacacggcattacatccgtcatatgcaac
gaggagcgactggccatggccgaccccgtcgtcatggcctacgatatcgagacgtcgaaa
ttgcccctgaaattccctgacgccgccacggaccagatcatgatgatatcgtacatgatc
gacggccagggtttcctgattaccaatcgcgaaattgtctctgaagacatttcggatttc
gaatacacgccaaaacccgagtacccaggtgcattcatgattttcaacgagaaggacgag
aagaatgtcatcgagagattctttgagcacatcaaggaggccagaccaactgtcattgca
acgtacaacggtgactttttcgattggccctttgtggaaacgagagccagcttccacggc
atcgacatgtaccaggagattggctggaagaagaacagtgaggatcagtaccagtgcagc
tatggcgtgcatatggattgtttccactgggtcaatcgtgattcatacctaccacaagga
tcgcgaggtctgaaagctgtcacagtcgcgaagctcggatacgacccagacgagctcgac
cccgaactcatgacgccctatgccgctgaacgaccgcaaaccctggcagagtattccgtt
tccgatgctgttgcgacctactacctgtatatgaaatacgtccaccccttcgtcttctcc
ctctgcacaattctgccgctgggcggcgatgatacgctgaggaaaggtaccggcacactt
tgcgagatgctgctgatggtgcaggcgtatgagaggaaaatcgtgcttcctaacaagcac
atggcgccaaaagaagccttctgggatggccacttgctcgattccgaaacttatgttggt
ggtcacgtcgagagtatagaagctgcgctacggttcaccatcgaggttgaggagaaaaag
tccatggctgatgtcgagaactacgaggaggtcaaggcacaggtagctgcacgactacag
gctctcaaggagacaccaaatcgcatggagcgacccctcatctaccacttggacgttgct
tccatgtatcccaacatcatgacgaccaatcgactgcagcccgactccatggtccaggaa
tccgattgtgcggcttgcgacttcaacagaccgggcaagacctgcgatcgacgtctgcca
tggtcgtggcgaggagagtacatccctgcgaagagagacgagtacaacatgatccgaaat
gcgctggaaagtgaaaagttccctgggaaatatcccaactcgcccatgcgaccgttccaa
gacttatcacaagacgaacaaacggctctcatcaggaaacgtctgcaaatgtattcgcag
aagatctatcataagattcacgactccaccattataaccaaggaagccatcatctgccag
cgagagaacccgttctacatcaacacggtgcgcgactttcgtgaccgtcgttacgactac
aaaggaaaggcgaaagtctggaaggggaaaacagaggccctcaagtcctccggagcaagc
tccactgaggttgaagcagcgaagaagatgatcatcttattcgattcgctacaattggcc
cacaaggtcattctcaattccttctacggctacgttatgcgaaagggttcgcgatggtac
tcgctcgagatggctggtgtcacatgcttgaccggcgccacgattattcagcttgctcgt
ggccttgttgagcgtcttggccgtccattagagctggatacggacggtatctggtgcatg
ttgcctgccacgttcccggagaacttctcgttcaagatgaaaggcggaaagaaggtcact
gtctcgtacccctgtgtcatgttgaaccatcttgtccatgccaagttcacgaatcaccag
taccaaaccctggttgacgagaagacgttcaagtatgagacgcacagcgacaactccatc
tttttcgaagtcgacggtccatacaaggctatggtcttgccaacttcaaaggaagaggac
aagaacttgaagaaacgttatgctgtcttcaacgacgatggaagtctcgcagagctcaaa
ggtttcgaagtcaagcgccgaggtgagctgaagctcatcaagatcttccagcaacaaatc
ttcaaattcttcttggaaggcacaacgctggccgagtgttatacggccgttgcaaaggtg
gctaaccgctggcttgatatccttcacagcaagggcgcatcactcgaggacgaggagctg
atggagctgatttcggagaaccgaagcatgtccaaaacattagaggagtatggctcgcag
aaatcaacatccatcacaacggccaagcgcttagccgacttcctgggtgagcaaatggtc
aaagacaagggtctgaactgcaaattcatcatctgcgcaagaccaaagaatgcacctgtc
acagaacgagccgtgcctgtagcaatcttttctgcggaggagcagacgaaacgggcgtat
ctcaagaagtggctcaaagaagagcccgctgacactgatcctcgggctcttctcgactgg
gactactatctcgagcgtctgggctccgtcattcaaaagctcatcaccattcctgccgca
ctgcagaaagtccggaacccagtgcctcgagtgcctcaccccgactggcttcagcgcagg
attaacatcaaggacgacaagatgaagcagaagaagatgacagatatgttcaccaaggga
ccccttgaagacatcacaaatctgaatggccgtggtgcagaagatatggaagatttcggc
acgaagctgctcaagcccaagactacgcaacaatatgcagacaacatccagacaacgttc
atgcaccaagctcacaacacattcaccaataactggcacttgttacacttgaaaacgacg
gagacaccgggtgtcgttaacgcctacgttctcattcatgccaagattcacacagtcaag
atcaaggtgtcacgcgtggtgtttctcaatttgaagagcaatgacatgcctgatgtcgat
attgccgggtgtgaagtagaacaggtcaaccatacccttcccaacggccattcatcaaca
cacctcttcaagctgatggtgcccgaggacgtctacttcaacgaggctgacagcttctcc
acactgttcaaccaccctagtgtggaaggtgtttacgagaagaatttgcccctcaacatc
cgtgccgtacttcagcttggcaacatatgtactgttgatgagaccaaggatggggttctt
ggcaaaggtcttgacgagggcttcgatcttgtcggtttgatgcgacctctgcaacccaag
ccgtatctagaagcctctcccctagcctatctttacatttcccagatctccgcaggcgaa
cgccaaatattcggtctcttctccacaaccaccagccaagcacacatcgtcatcctgaac
aagagtagagactcgggacaagagctaccaaatgtttccaggatatacgcagatgcgctc
aagcagcgcgggcaagaagcggaaggcactaactggcaggagtgcttcccgtaccaggag
aagctcaatttcaagatcactcaagtcacgacacggaggaaacttcaccttgaactcggc
gacattgtcaagaagctgcgtaaggatgaggtcaaaccgctgatgctcgtcattcaatca
tcacaacggaaccacttgatctcggaagtacccgtcctcagtgaattccccgtccttcct
ttgaagtacgacacgaccgacagctcgctgccgcccctcggctggcagactgttgcagcc
agaaggcttgtaggccactaccttggtctgggatcatgggttatgcatcttatgtctctc
gcgagatacggcgatgtccctctttgcaacctggaaagggacgatccacggttcttgatc
gacatcgcctacgccaggcgacttcaaaataacaatgtcgtactgtggtggtccgccagc
ccacgtccggatcatgctggctacgaaaaggacgatgtcacgggtcccctcgaaacagtt
tcgatgccaaacgtcaacaaacccggcactttcgcttctgtctgcatcgatcttgaggtt
cgcaatttggccattaatacgattctgacctcctctttgattaatgatctcgagggtgcg
gactctgtgtcttttaaccctgccgcggacgctggagcaaacgctgatgaggtcatctcg
tttgataatgcgtttgccaacgcaggtgtactggttctgcgagaaatggtcaaggcgtgg
tgggtagaggcctgcaagggcaacaccatggccgatgtcatggtgcagcatcttgtgcgt
tgggttgagagtcctgattccttcctctacgaccgcgcactgcactactacgtgcaaatg
atgtcgcgcaaagcctttcagcagcttatgggcgatttccgcaaggtcggtagccaagtc
atctttgccaactcgaatcgtttgcttttgcagaccacaaaagccgaagtcggaaccgcg
tacgcctacagcaactacgtcatcaagtcaataaagagcaagcccctgttccatttcatt
gatctcgagatcaaggagtactgggactatcttgtctggtatgatgagttcaactacgga
ggcaaggcgtgccaggaggtcgtcgaggcggacaaccagaatctggagacgatcatgcac
tggcaaatgtctacattccttcccgagcgtcttcagcccactttcaagaatggccaacgt
cttacgcagctgacaccctcccgcaaagatccgaacgacgagagtgcccttcttctcggc
aagagcttcgagaagccccttaagaagaccatctcgaaccttctcgctgttcagaagcgc
gagctcctccaccccgaactcgcgggcgactattctttccctgttctccctgggtcccat
ctcgccgcctatacggacggcgccggtgcacgctcaggcccgcttctcgagctcgtcaag
tctctcatgcaagtcctcagcctggaccgcaatatcacgctggaggcgcgcctgctgcgc
aaggagctcctcgccatgtttgacgtccgcgaattctccaagggcgcgacgttccagaac
ccgagcgccagcctcaagatgccgcagctcagctgcgatgtgtgcaccatggcgcgtgac
atggatttctgtcgtgacgccgacctgctgcccgaccaggggcaaacgcacaagccttgg
cggtgcgggttctgcgaggccgagtatgaccgcaacaccatcgaggagaggctcatcgcg
caggtcgaggggttcgccgtcgagtgggcgagccaggacgtgcagtgtgaaaagtgccac
gcgctgaggctgaacgagttcatggagcactgcgtctgcagcggcgcgtgggtggagagc
gtgagccgtgaagacatattgaagaaagttgcagtgtacggaaacgtggccaaattctac
ggcttgaggatgttgaaggaggtggttgaaggcttgaaagctgggttatag

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