Verticillium alfalfae: VDBG_03348
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Entry
VDBG_03348 CDS
T02227
Name
(RefSeq) DNA mismatch repair protein msh-2
KO
K08735
DNA mismatch repair protein MSH2
Organism
val
Verticillium alfalfae
Pathway
val03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VDBG_03348
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_03348
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
VDBG_03348
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_27
AAA_22
Motif
Other DBs
NCBI-GeneID:
9533780
NCBI-ProteinID:
XP_003007209
UniProt:
C9SDZ2
LinkDB
All DBs
AA seq
922 aa
AA seq
DB search
MSSRPELKVDDEHGFIRYFKSLPEVHEDTIRIFDRGDWYTAHGEDANFIARTVYKTTSVV
RQLGRDDKTGLPSVTMTVTVFRQFLREALYKLSKRVEIYQSTSGRMNWKVVKQASPGNLQ
DVEEELGGQFEAAPMILAVKITAKASEARSVGVCFADASVRELGVSEFLDNDLYSNFEAL
LIQLGVRECLIQADKAEKDKRDPELTKLRQIIDNCGVAVSERSAVEFGTKDIEQDLARLL
KDERAVTLLPQTEMKLSMGSAAALIKYLGVLHDPSNFGQYQLYQHDLAQFMKLDAAALKA
LNLMPGPRDGAKSMSVYGLLNHCKTPNGSRLLSQWLKQPLMSKQDIERRQQLVEAFVSDT
ELRQTMQEEHLRSVPDLYRLAKRFQRKKANLEDVVRAYQVIIRLPGFLGTLEGVMDEAYR
DPLDEAYTSKLRTLSDSLVKLQEMVETTVDLDALDRHEYVIKPEFDDSLRIIRKKLDKAK
RDIDQEFNKAAHDLGQEKEKKIFLENHKVHGYCMRLTRTEAGCIRNKSGYQECSTQKNGV
YFTTRNLQNLRREFDQQSQNYNRTQASLVNEVVGVAASYCPVLEKLAGVLAHLDVIISFA
HCSVHAPIEYVRPKMHKRGEGQTVLKEARHPCLEMQDDVQFITNDVELTKDKSSFLIITG
PNMGGKSTYIRQIGVIALMAQVGCFVPCAEAEMTIFDSILARVGASDSQLKGVSTFMAEM
LETANILKSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCSAMFATHFHELTA
LADQHAQVKNLHVTAHISGSEEGDAKREVTLLYKVEDGICDQSFGIHVAELVRFPDKVVR
MAKRKADELEDFTTKHEDLGLKYNKSDVEEGSAMLKDVLVRWKDEIKGGAMSKQDMVKKM
RELVASDEKLLANPFFQSVKLL
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcgcgacccgagctgaaggtcgacgatgagcatggcttcattcgatacttcaag
tcccttccagaggttcatgaggacacgatccggatttttgaccgaggtgattggtacaca
gcacatggtgaagatgccaacttcatcgcgagaacagtctataaaaccacatcagtcgtt
cgacaactaggacgagatgacaagaccggccttccgtctgtcaccatgaccgtgaccgtt
ttccgacaattcctccgagaagccctctacaagctcagcaagcgcgtggagatttaccaa
agcacaagtggtcgcatgaactggaaggtcgtcaaacaagcctcgcccggaaacctgcaa
gatgttgaggaagagctcggagggcaatttgaggcagctcctatgatcctggccgtcaag
attacagccaaggcctccgaggcgcgcagcgtcggtgtctgcttcgccgacgctagcgtc
cgagaactgggtgtcagcgaattcctcgacaatgacctctactcgaatttcgaggctctc
ttgattcagctcggtgtccgggagtgtctgatacaggccgacaaggcggagaaggataag
cgagatcctgaactcaccaagctgcgacaaatcatcgacaattgcggtgtggctgtctca
gagcggtcggcagtcgaatttgggaccaaagacatcgaacaggacctcgcccgactgctc
aaggacgaaagggctgtcacacttctgcctcagacggaaatgaagctgtccatgggatct
gctgccgcactcatcaaatacctgggggttctacatgacccttccaactttggacaatac
cagttgtaccagcacgacttggctcaattcatgaagctcgatgccgcagccctcaaggcc
ttgaacctcatgccaggcccccgagacggagcgaaatcgatgagcgtgtacggcctgctc
aatcactgcaagacccccaacggcagccgtttgctgtcccagtggctgaagcagcctctg
atgagcaaacaagacatcgaaagacgccagcagctggtggaggccttcgtcagcgacacc
gaactccgccaaacgatgcaggaggagcacctgcgttcagtccctgatctttaccgtctt
gcgaagcgtttccaacggaagaaggccaacctggaagatgtggttcgggcgtaccaggtc
atcattcgcctgcccggcttcctcggcaccttggaaggtgtgatggacgaggcgtaccgg
gaccctctggacgaggcatacacctccaaactccgcactctttccgacagccttgtcaag
ctccaggaaatggttgagaccacggtcgatctggacgctcttgatcgccatgagtacgtc
atcaaacctgaatttgatgacagtctacgcatcattcgcaaaaagcttgacaaggcgaag
agagacattgaccaggagttcaacaaggccgcccacgatcttggacaggagaaggagaag
aagatattcctcgaaaaccacaaagttcacggatactgcatgcgactaacgaggaccgaa
gccggctgtatccgcaacaaatcaggctaccaggagtgctcgacacagaagaacggcgtg
tacttcacgaccaggaacctgcagaacctacgccgcgagttcgatcagcagtcgcaaaac
tacaacagaacccaggctagcttggtgaacgaggtcgtcggagttgcggcctcgtactgc
cctgttctcgagaaacttgccggcgtccttgcccaccttgatgtcatcatctcttttgcc
cactgctcagttcacgcgccgatcgagtacgtccggccgaagatgcacaaacggggcgag
ggccagacagtgctgaaagaggcacgtcacccttgtttggagatgcaggatgatgtgcag
ttcatcacgaacgatgtggagctcacgaaggacaagtcctccttccttatcatcaccgga
cccaacatgggcggaaagtcgacgtacatccgccagattggcgtcatcgccctcatggcg
caggtcggctgcttcgttccctgcgcggaggctgagatgaccatcttcgactccatcctg
gctcgcgtcggtgcgagcgactcccagctcaagggcgtctccaccttcatggccgagatg
ctcgagacagccaacattctgaagtctgcgacagccgagtcccttatcatcattgatgag
ctcggtcgcggcacgtcgacatatgacggcttcggcctagcctgggccatttcagaacac
attgtcaaggagattggctgctccgccatgttcgcgacccactttcacgagctcacggcg
ctggccgaccaacacgcccaagtgaagaacctccacgtcacggcgcacattagcggaagc
gaagaaggtgacgccaagcgcgaggtgacgttgctgtacaaggtcgaagacggcatctgc
gaccaaagcttcggcatccacgtcgccgagctcgtgcgcttcccggacaaggtcgtccgc
atggcgaagcgcaaggcggacgagcttgaggactttacgaccaagcacgaagacctcggg
cttaagtacaacaagagtgacgtcgaagagggcagcgccatgcttaaggacgtgctcgtt
cggtggaaggatgagatcaagggcggcgcaatgagcaaacaagacatggtcaagaagatg
agggagctggtcgcgtcagacgagaagctgttggcgaatcccttctttcagtcggtcaag
cttctgtaa
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