Verticillium alfalfae: VDBG_03410
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Entry
VDBG_03410 CDS
T02227
Name
(RefSeq) RNA polymerase II transcription factor B subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
val
Verticillium alfalfae
Pathway
val03022
Basal transcription factors
val03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VDBG_03410
09124 Replication and repair
03420 Nucleotide excision repair
VDBG_03410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_03410
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_03410
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VDBG_03410
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VDBG_03410
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
DUF6285
Motif
Other DBs
NCBI-GeneID:
9533354
NCBI-ProteinID:
XP_003007271
UniProt:
C9SE54
LinkDB
All DBs
AA seq
630 aa
AA seq
DB search
MSARTPRVSAPQHLKLAARFTADTLTDLQQTPDTAAKVMLRIIEKAPDATEQTPYSFHFT
SPDARAEANAVKDVLSKLLQDLRSGDPNLPKPASSTGTPNANGEGNGGVSASMAFASSVN
SKPAPPRWFDDGQLKSDIELQQSLMKADRNLYQTYVDARATKPDSISDAAFNSQFWSTRT
NLLRAHAIEMNQKRGSYNVLSTIKPRTEGEELKLNISVEQVQLIFSQHPLIKRLYNENVP
KITEAEFWSRFFLSKLSRTLRGDKVQDEKKEGIVRDPLFDNHDESENTLGFQSRIMAQSV
PNIINVEANEENQGGFRSGNQADFEMRPRKNVLIVKTLNSLSEKIMANVAPSDIEAEQTN
GNEDATFGQLALRDLQGDVEEQRVILNVKEQSRFFSKHEDTQSANARIFSRQVAADVLSS
VRRELRLMATDNSGALDLHAGISVDDQSDSDEETRKPPRVGSRATRKLAEDDVMAGVKRR
RMEKYGTGSDATDLMGLQPELAERCQLTHATTVEFLHQFWTAFLSGDPDRAAELQYLVES
LKRSEERIHAVAGDAEKARKALIEAKTAEIQAKYQRTRIKDKSWHPKHVKGGQKAVFQMM
QPITDALKKAQADYQRALAAEGVQATTENQ
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcacgcacaccacgtgtctctgctccccaacatctcaagttggccgcccgcttc
accgctgacacgttgacagacttgcaacagacgccagataccgcggctaaagtcatgctg
cggattatagaaaaggcaccagatgcgactgaacagacaccgtactcattccactttacg
tctccggatgcgcgcgccgaggccaacgccgtgaaagatgtcctgtccaaattactacag
gacctgcgatcaggcgacccaaacctgccgaagccggcatcgtccacgggcacacccaac
gccaatggcgagggcaacggcggcgtctctgcctccatggcctttgcgagctcggtcaac
tcaaagccagccccgccacgctggtttgacgacggccagctcaagagcgacattgaactt
caacagtctctgatgaaggcggaccgcaatctctaccagacctatgttgatgcccgcgcc
accaagccggattctatctctgatgcggctttcaactcccaattctggtccacacgcaca
aaccttctgcgagcccacgctatcgagatgaaccagaagaggggctcctacaacgtcttg
tcaaccatcaagccacggacagagggtgaggagctcaagctgaatatcagcgtcgagcag
gtgcagctcattttcagccagcacccactcatcaagcgtctctacaatgaaaacgtgccc
aagatcaccgaggccgagttctggtcacgctttttcctcagcaagctgtcacgaaccctg
aggggcgacaaggtgcaagacgagaagaaggagggcatcgtccgagaccccctttttgac
aaccatgatgagagcgaaaacacactgggctttcaaagcaggatcatggcacaaagcgtg
ccgaacatcatcaacgtcgaagccaatgaagagaaccaaggtggttttcgaagcggcaac
caagccgactttgagatgcggcccaggaagaacgttctcatcgtcaagacgctcaacagt
ttgagcgaaaagatcatggcaaacgtcgccccgtccgacattgaggcagagcagacgaac
gggaacgaagatgccactttcggccagctggcgctgcgagacttgcaaggcgatgtcgag
gaacagcgcgtgattctcaacgtcaaggagcaaagccgcttcttctccaagcacgaggac
acgcaatctgcgaatgctcggatcttttccaggcaggttgccgctgacgtcttgtccagc
gtccgtcgcgagttgcgtcttatggcgacggacaactctggcgcactagatctgcacgct
ggcatcagcgtcgatgaccaaagtgacagcgacgaagaaacaaggaagcccccgcgcgtc
ggttcccgagcaacgagaaagctggccgaggacgatgtcatggccggcgtcaaacggcgg
cgcatggaaaagtacggcaccggctcagacgccactgacctgatgggactgcagcctgag
ctcgctgagcgctgccagttgacgcatgctacgacggtggaattcctacaccagttctgg
accgctttcctctccggcgacccggaccgagccgcagagctgcagtatttggtcgagtca
ctaaagcggtccgaagaacgcatccatgccgtggcgggcgacgccgaaaaggccaggaaa
gcactcatcgaagctaagacagcggagattcaggccaagtaccagaggacgcgcatcaaa
gacaagagctggcaccctaaacatgtcaagggcggccagaaggctgtcttccagatgatg
cagcccattactgatgccctgaagaaggcacaggccgactaccagcgtgctctggctgca
gaaggtgtccaggccacgaccgaaaaccaatag
DBGET
integrated database retrieval system
