Verticillium alfalfae: VDBG_03424
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Entry
VDBG_03424 CDS
T02227
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
val
Verticillium alfalfae
Pathway
val03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
VDBG_03424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_03424
Enzymes [BR:
val01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
VDBG_03424
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
VDBG_03424
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
9533368
NCBI-ProteinID:
XP_003007285
UniProt:
C9SE91
LinkDB
All DBs
AA seq
1686 aa
AA seq
DB search
MNISQPISSTVETVEFTFLTETEIRAISVKRIENDSTFDNLLNPVPGGLYDPALGSWGDS
ICSTCNLNQSSCPGHAGHIELPVPVYHPVFLDQVLRLLRAQCVYCKGLRLRQRDVHLYSC
KLRLLQHGLLRAAHLIDAVGEDFQGLQIPGVTETAEAEEEGSGADNLIRAREFFVKRQLK
EHKATVGDVRKGKHEAKEMRHLRGHLASYRKDAFVKIFEKPLSERDAAKMAQTNLRTKDA
MTAATPVSKTKSNGYTSDEAIADVDSSASDADRDVNMAEPDSSSESEGQAAKVSEGQAKA
SARSQRYITAMEVRERLRELFDKEQEVLSLVYNSKPLKKKAGKVSADMFFLQTLLVPPNR
FRPEARTGDSEISEAQQNSLYKLVLRSCGTIARVHQSIGGATTERRARTMTDLHQAWTDL
QNAVNSLIDKDKNPVMGAAAKRNEEGIKQKLEKKEGLFRKNMMGKRVNFAARSVISPDPN
IETNEIGVPPVFARKLTFPEPVTSHNFRDMQRAVINGVDKWPGAAAIEYENGQITNLRGK
SADDRISLANQLLAPTDSNTSGVRNKKVYRHLTNGDVVLMNRQPTLHKPSIMGHRVRVLP
GEKTIRMHYANCNTYNADFDGDEMNMHFPQNEVARAEALQIADTDHQYLSGTAGKPLRGL
IQDHISVSVSLCSRDSFFTRGDFQQLVYAALRPESGHILGERLELVPPAIIKPVPRWTGK
QVITTILKNIKPPTGEGIWMSGKTQTPADRWGKGSEEGIVLFQDGHFLHGILDKAHLGPS
SGGLIHSVHEVYGPAIAGKLLSSLGRLLTRYSNMRAFTCGMDDLRLTPEGEQTRRETLRE
ASDIGLQVATKYVSLGDSNPTSTDAELLVRLEEVMRDDNKQEGLDMLMNQRSGELSQAIT
KACLPSGLVKQFPKNQMQAMTVSGAKGGPVNANLISCNLGQQVLEGRRVPLMVSGKSLPC
FKPFDSSVRAGGYIVQRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCIIKGME
GLTVSYDSTVRDADGTLIQFLYGEDGLDPTKQKYLTDFGFILRNIESESAQLGFSSDFRE
TLAGNKDSILKHMKSAIKHAKAGKVGGKDPVISMVNPARVAFATSEKFYESMTEYIKENK
DGLVREKGEKRPATSFIPSVSKKSAELVLAAKYMRSLVEAGEGVGIVAGQSIGEPSTQMT
LNTFHLAGHSAKNVTLGIPRLREILMTASKTISTPSMTLFPIAELSAAECEVFQKSISVL
PLAHVLDMASVNERAGKGKDGSLHRLYDVRLEFFPSEEYTKAYAIEAADVLAAVEKKFLG
HLLKMMLKEIRKKTMMSSAATPVVGSKAGAVEMVTGSGARPAPPDEDEDEDEGEDEDDAT
NAKQRANRSEAVSYGPNDDDDDAVQNQMDREASPDEDEGFGGSPPPAGAKRSSGNNDDDN
NGQSSEDEETGRAERVKERHAHVTRFRSDEVSGKWCEFTLEFDANTPKLLLLDIVQAAVK
KTVVQELPGVGACTLVFDHKVTDPETGKEKDVPAIHTSGANLRIMQKYSDYINPNKTVTN
DIAAVLDVYGVEACRSNIVLELGNVFGGHGISVDNRHLNLIADYMTRNGGYTPFNRNGLR
GNVSPFTKMSFETTLAFLKDAVLDGDWDDLTTPSSRLVMGRLGKTGTGAFDVLTKLPTRH
SVSAAE
NT seq
5061 nt
NT seq
+upstream
nt +downstream
nt
atgaacatctcgcaacctatctcgtccaccgtcgagacggttgaattcacctttcttacc
gagacggagatccgagcaatctcggtcaagaggatcgaaaacgacagcacattcgacaac
cttctgaacccggtccccggaggtctctatgatccagctcttggctcctggggcgactct
atttgctcgacatgcaacctcaatcaatcctcctgtccgggccacgcgggccatattgag
ctcccagttccagtctaccatcccgtattcctggaccaagtgttacggctactacgggcg
caatgcgtttattgcaaaggcctccgcctccgtcaacgcgacgtccacctgtactcgtgc
aagttgcgactcctacagcatggcctgctcagagctgcccacctgattgatgccgtcgga
gaggatttccagggcctccagattcctggcgtgaccgagactgccgaagcggaagaggag
ggcagtggtgccgacaatctcatccgggcccgagagttcttcgttaagcgccaacttaaa
gaacacaaagccaccgtcggtgatgtgcgcaaaggaaaacacgaagccaaagaaatgcga
cacttgcgggggcatctcgcctcttacaggaaggacgccttcgtgaaaatatttgagaag
cctctatccgagcgagatgccgcaaagatggcgcaaaccaacctcagaaccaaagacgcc
atgaccgcagcgacaccagtgtccaagacaaagtcgaatggatatacatcggacgaggcc
attgctgatgtggactcttcagcatccgacgctgaccgggatgtcaacatggccgaaccc
gactccagctctgaaagcgagggacaggctgccaaggtgtctgaaggccaagcaaaagct
tctgcgcgcagccaacgatacatcacggccatggaagtacgagagcgcttgcgagagcta
ttcgacaaggagcaggaggtcctgtcacttgtttacaactccaagcctctcaagaagaag
gccggaaaagtttctgcggacatgttcttcctacagacgctcctggtccctcccaatcga
ttcagacctgaggcccgtacaggtgactcggagatctctgaagcgcaacagaactcgctg
tacaagctagtgctccgaagctgcgggacgattgcccgtgtccaccagagcatcggtgga
gcgacgaccgagcgacgtgcaaggacaatgacggacttgcaccaagcgtggaccgatcta
cagaacgccgtcaactcactgatcgacaaagataaaaaccccgtgatgggtgccgccgcg
aagaggaatgaggagggcatcaaacagaagctggaaaagaaggaaggcctcttccgcaaa
aacatgatgggcaagcgtgtcaacttcgctgctcgtagtgtcatttcaccagaccccaat
atcgagaccaacgagattggtgtgcctcctgtcttcgcacgaaagctgacatttcccgag
cccgtcaccagtcacaacttcagagacatgcagcgagctgtaatcaatggcgttgacaag
tggcccggcgcggcagctatcgaatacgaaaacgggcagatcaccaacctccgcggcaag
tcggcggatgaccgaatttccttggccaaccagcttctcgcgccaaccgatagcaacacg
agtggtgttaggaacaagaaggtgtaccgacatcttacaaacggagatgtcgtgctcatg
aaccgtcagccgacattgcacaagccctccatcatgggtcatcgtgtacgtgtgctgcct
ggcgagaagacgattcgaatgcattatgccaactgcaatacgtacaatgccgacttcgac
ggagacgaaatgaacatgcattttccgcaaaacgaagttgctcgcgcagaggcgctgcag
atcgcagacaccgaccaccagtacctttcaggtaccgccggaaagccactacgaggcctc
attcaggatcacatttcagtttcggtctctctgtgtagtagagactcgttttttactcgt
ggtgatttccagcagctagtttatgctgctcttcggcccgagagcgggcacatcctcggc
gaacgcctcgaactcgtccctcctgccatcatcaaaccagtcccaagatggacgggaaag
caggtcatcacaaccattctcaagaacatcaaaccaccgactggcgaaggcatctggatg
agtggcaagactcagacacccgccgatcgctggggtaaaggctctgaagagggtatagtt
cttttccaggacggccacttcctgcacggcatactcgacaaggctcaccttggcccaagc
tctggcggcctcattcattccgttcacgaggtgtatggccctgctattgctgggaagctt
cttagcagtctaggcagacttctcacaagatattcaaatatgcgagccttcacttgcggc
atggatgacttgaggctcacacccgagggagaacaaactcgacgagaaacgctcagggag
gccagtgacattggactacaagtggcgactaagtatgtctctctcggagacagcaaccct
accagcacggatgctgaactactcgtccgcctcgaggaggtcatgcgcgacgacaacaag
caagaaggcttggatatgctcatgaaccaacgcagcggcgagctttcacaggcgatcacg
aaggcctgccttccgagtggtttggtgaagcagtttcccaaaaaccagatgcaagccatg
accgtgtctggagcgaagggtggaccagtcaacgcgaacctcatctcgtgcaacctgggg
cagcaggtcttggagggcagaagggtgccattgatggtcagtggcaagtcactgccctgc
ttcaaaccgtttgactccagtgtccgggccggcggctacattgtgcagcgcttcctgact
ggtattcggccacaagagtactacttccaccacatggccggacgcgaaggtttaatcgac
actgccgtcaaaacatctcgttccggctacctgcaacgctgtattatcaagggcatggag
ggattgacagtctcctacgactctactgtccgcgatgcagacggcacgctgatccagttc
ttgtacggcgaggatggcctggatcccaccaagcaaaagtacctgacggatttcggcttc
atcctccgcaacatcgaatcagagtcggcgcagttgggcttcagcagcgacttccgggag
acgctggccggcaacaaggatagtatcctgaaacacatgaagagcgccatcaagcatgcc
aaggcgggcaaggttggaggtaaggaccctgtcatctctatggtcaaccccgcccgagtt
gcctttgccacgtcggagaagttttacgagagcatgacggaatacatcaaagagaacaag
gatggcctagtacgtgagaagggagagaagcggcctgctacgtccttcattcctagcgtg
agcaagaaatctgcggagctcgtgcttgccgccaagtacatgcggtcgctggtcgaagct
ggcgagggtgtcggcattgtggccggccaaagtattggtgagccatcgacacagatgact
ttgaacaccttccacttggctggtcactccgctaaaaacgtgacgcttggtatccctcgc
ctgcgagaaattctcatgaccgcgagcaagacaatatcaaccccgtccatgacgctcttc
cccatcgctgaactatcagcggcagagtgcgaggtcttccaaaagtcaatcagtgtgcta
cccctggcacacgtgctcgatatggcatctgtgaacgagcgagccggcaagggcaaggac
ggctcgctgcaccgactttacgatgttcgtctcgagttcttcccatccgaagagtacacc
aaggcatatgctatcgaggcagcagacgtgctggctgctgttgagaagaaatttttgggc
catctgctcaagatgatgctcaaagaaatcaggaagaagacgatgatgtcgagtgcagca
acaccagtcgtgggtagcaaggctggcgcggtcgaaatggtgaccggctcaggagcgcgc
cccgccccgcctgacgaggatgaggatgaggatgagggcgaggacgaggacgacgcaacc
aacgccaagcagcgtgccaatcgctccgaggctgtttcgtacggacctaatgacgacgac
gatgacgctgtgcaaaaccagatggatcgcgaggcatcccctgatgaggatgaaggcttt
ggaggaagcccccctccggctggtgcgaaacgcagcagcggcaacaacgacgacgacaac
aatggacaatcttccgaggacgaagaaaccggcagggctgagcgtgtgaaggagcgccat
gctcatgtgacaagattccgcagtgacgaagtgtcgggcaagtggtgcgagttcacgctc
gaattcgatgccaacacccccaagctgcttctactcgacattgtacaggctgctgtcaag
aagacggtggtgcaggaactgcccggtgtaggagcttgtacacttgtcttcgaccacaag
gtcaccgatccggagacgggcaaggagaaagatgttccagcgatccatacgtccggcgcc
aatctccggatcatgcagaagtacagcgattacatcaacccgaacaagacggtaaccaac
gacattgctgcagttttggacgtgtacggtgtggaagcttgccgcagcaacatcgtgctc
gagctcggcaacgtattcggaggtcacggcatctccgttgataatcgccatctcaacctc
attgctgactacatgacgagaaatggcggatacacgcctttcaatcgcaatgggctccgc
ggtaatgtcagcccgttcaccaagatgagcttcgagactacgctggctttcctcaaggac
gctgtgttggatggcgactgggatgacctgacgacgccgagtagccgtcttgtcatggga
cgtttgggcaagacaggaacaggggcattcgatgtgttgacgaaactgccgacgcgacac
tcggtttctgcggcagaatga
DBGET
integrated database retrieval system
