KEGG   Verticillium alfalfae: VDBG_03510
Entry
VDBG_03510        CDS       T02227                                 
Name
(RefSeq) ATP-dependent RNA helicase dhh-1
  KO
K12614  ATP-dependent RNA helicase DDX6/DHH1 [EC:5.6.2.7]
Organism
val  Verticillium alfalfae
Pathway
val03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VDBG_03510
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_03510
   03036 Chromosome and associated proteins [BR:val03036]
    VDBG_03510
Enzymes [BR:val01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VDBG_03510
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     VDBG_03510
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     VDBG_03510
Chromosome and associated proteins [BR:val03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    VDBG_03510
SSDB
Motif
Pfam: DEAD Helicase_C ResIII NA-iREase2 CMS1
Other DBs
NCBI-GeneID: 9532242
NCBI-ProteinID: XP_003005557
UniProt: C9SFZ7
LinkDB
AA seq 390 aa
MSDALADQLKGTSLNDAASEDWKKNLKLPAKDNRQQTEDVTNTKGLEFENFQLKRDLLMG
IFEAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPALEKINPKVSKIQCLIL
VPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILDLAG
KTVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQVMLFSATFPLSVKDFSDKN
MANPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLA
KKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDF
PKNAETYLHRIGRSGRYGHLADGWSLRAIP
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgtcagacgcactcgcagaccagttgaaggggacctctctgaacgacgccgcgtctgaa
gactggaagaagaacctcaagctgccagcgaaagacaacaggcaacaaactgaggatgtc
acaaacacgaaaggtctggaattcgagaacttccaactgaagagggatctgctgatggga
atcttcgaggccggtttcgagaagccctcgcccatccaagaagaagccatccctgtcgcc
ctgaccggtcgcgatgtcctggcccgcgccaagaacggtaccggcaagaccgccgccttc
gtcatccctgccctcgaaaagatcaaccccaaagtctccaaaatccagtgcctcatcctc
gtccccacacgcgagctcgctatgcaaacatctcaggtttgcaagacgctcggcaagcac
ctcggcatcaacgtcatggttaccactggtggcactggccttcgcgacgacattatccgt
ctgcaggaccccgtccatatcgttgtcggaacccctggtcgtattctcgatctcgcaggc
aagaccgtcgccgatctgagcgagtgtcccatgttcatcatggacgaggcagacaagctc
ctgtccattgagttcactcccgtcattgagcagctgttgcagttccatcccaaggaccgc
caggtcatgctcttctccgcgactttccccttgtcggtcaaggacttctctgacaagaac
atggccaacccttacgaaatcaacctcatggacgaactcactctccgtggtatcacccaa
tactatgccttcgtcgaggagaagcaaaaggttcactgcctcaacacgctgttttccaag
ctgcaaatcaaccagtctatcatcttctgcaactcaacaaaccgtgtcgaactgctggcg
aagaagatcaccgagctgggctactcatgcttctactctcacgccaagatggcccagcag
gctcgcaaccgtgttttccacgatttccgcaacggcgtgtgccgcaacctcgtgtgctcg
gatctcctgactcgcggtatcgacattcaggctgtcaacgtcgtcatcaactttgacttc
cccaagaatgctgagacctatctgcaccgtatcggccgatctggtcgttacggtcacctt
gctgatggctggtccttgagggccattccttga

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