Verticillium alfalfae: VDBG_03510
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Entry
VDBG_03510 CDS
T02227
Name
(RefSeq) ATP-dependent RNA helicase dhh-1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
val
Verticillium alfalfae
Pathway
val03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDBG_03510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_03510
03036 Chromosome and associated proteins [BR:
val03036
]
VDBG_03510
Enzymes [BR:
val01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VDBG_03510
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
VDBG_03510
mRNA degradation factors
5'-3' decay
Decapping complex
VDBG_03510
Chromosome and associated proteins [BR:
val03036
]
Eukaryotic type
Gene silencing
piRNA pathway
VDBG_03510
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
9532242
NCBI-ProteinID:
XP_003005557
UniProt:
C9SFZ7
LinkDB
All DBs
AA seq
390 aa
AA seq
DB search
MSDALADQLKGTSLNDAASEDWKKNLKLPAKDNRQQTEDVTNTKGLEFENFQLKRDLLMG
IFEAGFEKPSPIQEEAIPVALTGRDVLARAKNGTGKTAAFVIPALEKINPKVSKIQCLIL
VPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILDLAG
KTVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQVMLFSATFPLSVKDFSDKN
MANPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLA
KKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDF
PKNAETYLHRIGRSGRYGHLADGWSLRAIP
NT seq
1173 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgcactcgcagaccagttgaaggggacctctctgaacgacgccgcgtctgaa
gactggaagaagaacctcaagctgccagcgaaagacaacaggcaacaaactgaggatgtc
acaaacacgaaaggtctggaattcgagaacttccaactgaagagggatctgctgatggga
atcttcgaggccggtttcgagaagccctcgcccatccaagaagaagccatccctgtcgcc
ctgaccggtcgcgatgtcctggcccgcgccaagaacggtaccggcaagaccgccgccttc
gtcatccctgccctcgaaaagatcaaccccaaagtctccaaaatccagtgcctcatcctc
gtccccacacgcgagctcgctatgcaaacatctcaggtttgcaagacgctcggcaagcac
ctcggcatcaacgtcatggttaccactggtggcactggccttcgcgacgacattatccgt
ctgcaggaccccgtccatatcgttgtcggaacccctggtcgtattctcgatctcgcaggc
aagaccgtcgccgatctgagcgagtgtcccatgttcatcatggacgaggcagacaagctc
ctgtccattgagttcactcccgtcattgagcagctgttgcagttccatcccaaggaccgc
caggtcatgctcttctccgcgactttccccttgtcggtcaaggacttctctgacaagaac
atggccaacccttacgaaatcaacctcatggacgaactcactctccgtggtatcacccaa
tactatgccttcgtcgaggagaagcaaaaggttcactgcctcaacacgctgttttccaag
ctgcaaatcaaccagtctatcatcttctgcaactcaacaaaccgtgtcgaactgctggcg
aagaagatcaccgagctgggctactcatgcttctactctcacgccaagatggcccagcag
gctcgcaaccgtgttttccacgatttccgcaacggcgtgtgccgcaacctcgtgtgctcg
gatctcctgactcgcggtatcgacattcaggctgtcaacgtcgtcatcaactttgacttc
cccaagaatgctgagacctatctgcaccgtatcggccgatctggtcgttacggtcacctt
gctgatggctggtccttgagggccattccttga
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