KEGG   Verticillium alfalfae: VDBG_03519
Entry
VDBG_03519        CDS       T02227                                 
Name
(RefSeq) DNA-repair protein rad2
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
val  Verticillium alfalfae
Pathway
val03030  DNA replication
val03410  Base excision repair
val03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VDBG_03519
   03410 Base excision repair
    VDBG_03519
   03450 Non-homologous end-joining
    VDBG_03519
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:val03032]
    VDBG_03519
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_03519
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:val04147]
    VDBG_03519
DNA replication proteins [BR:val03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    VDBG_03519
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     VDBG_03519
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     VDBG_03519
Exosome [BR:val04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   VDBG_03519
SSDB
Motif
Pfam: XPG_N XPG_I 5_3_exonuc XRN_N
Other DBs
NCBI-GeneID: 9532251
NCBI-ProteinID: XP_003005566
UniProt: C9SG06
LinkDB
AA seq 308 aa
MGIKNLFQILKEEAPDAIKEGEIKNQFGRKVAIDASMSIYSFLIAVRSDGQQLMNESGET
TSHLMGMFYRTLRMVDNGIKPLYVFDGAPPKLKSGELAKRFQRKQEAKEGLEEAKETGTA
EDIEKFSRRTVRVTREHNAECQKLLRLMGVPFIIAPTEAEAQCAVLAKGGKVYAAASEDM
DTLTFETPILLRHLTYSEQRKEPIQEIHLDKVMEGLGMERNQFVDLCILLGCDYLDPVPK
VGPSTALKLIREHKTLEGVVDYIKNDPKSKYTLPEDWPFRRRARTVSQPRRATGRPPRLR
LQVGEAGH
NT seq 927 nt   +upstreamnt  +downstreamnt
atgggtatcaagaacctgttccaaatcctcaaggaggaggctcccgacgctatcaaggag
ggcgagatcaaaaaccagttcggacgaaaggtggccattgatgcgtccatgtcgatctac
tccttcctcatcgcagtgcggtcggacggccagcaactgatgaacgaatcaggcgagacg
acctcgcacctgatgggcatgttctatcgtacactgcgcatggtcgacaatggaatcaag
cctctttacgtctttgacggcgcaccacccaaactcaagtcgggtgagctcgccaagcga
ttccagcgcaaacaagaagccaaggaggggctcgaggaagccaaggagacgggcacagca
gaggatattgaaaagttttcgcgacgaacggtgcgcgtgacacgcgagcacaatgcggaa
tgccagaaactgctgaggctgatgggcgtgccgttcatcattgcgcccacggaggccgag
gctcaatgcgccgtcctggccaagggcggcaaggtgtacgctgccgcgagcgaggacatg
gacaccctcacatttgagacgcccatcctgctgcgccatttgacatacagtgagcagcgc
aaggagccgattcaggagatccatctcgacaaggtcatggaagggctcggcatggagcgc
aaccaatttgttgacctctgcattcttctgggctgcgattacctcgatccggtgcccaaa
gtcggccccagcacggcgctcaagctgatccgcgagcacaagacactcgaaggggtggtg
gactatatcaagaatgatcccaagagcaagtacacgctgccggaggactggccatttcgc
agacgcgcgcgaactgtttctcaacccagacgtgcgaccggcagaccaccccgactgcga
cttcaagtgggagaagccggacattga

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