Verticillium alfalfae: VDBG_03647
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Entry
VDBG_03647 CDS
T02227
Name
(RefSeq) superkiller protein
KO
K12600
superkiller protein 3
Organism
val
Verticillium alfalfae
Pathway
val03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDBG_03647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_03647
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
VDBG_03647
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_16
TPR_19
TPR_2
TPR_22
TPR_1
TPR_CcmH_CycH
TPR_12
TPR_8
TPR_17
TPR_14
CFAP70_mid_TPR
TPR_11
TPR_7
CABIN1_N
TPR_Psidin_N
ARM_TT21_N
TTC22_N
ARM_TT21_C
TPR_Slam
TPR_9
TPR_6
T7SS_EccA1_N
TPR_10
PRP6_TPR
HIR3_bundle
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
9532384
NCBI-ProteinID:
XP_003005694
UniProt:
C9SGP3
LinkDB
All DBs
AA seq
1415 aa
AA seq
DB search
MSSKAQLKSIADLVKQSKWDDAVQKATDFLGNDPKNYQANLLLAFALDKKSKFDEAEKAY
RAAAALKPQDSQAWQGLIKLFEKQGPQKISGYKQAALSLAEIWRDADEMYKCQDVIDKFI
DYARAHGDRTQYVDALDLILPDSPIYPALEGRVAHPAKTYDTMAQIIETDEKKRINTLIG
ERRTRIGARVAEVTLEVKREVLGSSKLAHVYQQLIIWSSDDDVRRKYEEKLLQWWHTMLL
VSPPGPQKAEALQTVLRLSLDMVIIKHPFQLAWEIAINWKDGPEIRDWDVNMLRDYCTFF
PETDLYKVITGYLTSSISPFPKPVPTDMEASETEDESEDDDGGGVSMVPLTDDDRLFMMI
DGIATADSIFAYRLMGEYYQHLEEHESIVELMRKAQKHLATERIRTGVPFHHTGDAYALF
LGTALVFYQSPRHHTEAKSLFEGVLAHDPSSTAALIGIGLIYEEEEDYDDAVDFLERAVG
RDPSNLRIKTEAAWVKALKGDYELARAELEASLPLIEKKGQTSKELLALTQYRLGSCIWN
LDTSKAARKSRTGAYAYFLDALKNDLNLAPAYTSLGVYYAEYAKDKKRARRCFQKAVELS
SSEVTAAERLARSFADEGDWDRVELVAQRVVDSGKVKPPPGSKRKGISWPFAALGVAELN
KQDYHKAIVSFQSALRVSPEDYHSWVGLGESYYSSGRYIAGMKATLNAQKLEETISADKL
GDTWFTKYMLANIKRELGEYDESIVLYREVLDGRVGEDGVAIALMQTLVENALDGVEKGF
FGKSVELALETISFAAKADDSVVKTFNYWKTLGDACSVFSAVQSRAADFPGEAVTAIIEK
GAEDAYALLADIDHVDATVVSAKGLFSEDERLGVDLTRCIHATILCHKRAIHESATDIHA
QAVAYYNLGWAEHRAHICLPSSIRKKSSVYLRASMRCFKRAIELEAGNSEFWNSLGVVTS
EISPAVAQHSFVRSVHLNERSPVAWANLGTLALLQNDVRLANEAFTRAQSTDPDYAHAWL
GQGFVALLLGEPKEARGLFTHAMDIAESSSALTRRQYSVAIFDHILTTPLNFTISSLIQP
VFALSQLNRLKPQDLAYGHLSSLFRERTRDNAPAVAVLEKICGVLETDYELTESAQSLAR
FALARTDLARLYLAAGSYEQAIECGDLAIQLSSDESDNELTMDERKKARLSAHLTVGLAQ
YYSQDMAESLRCFEAALSESDNNPDAVCLLAQVLWAAGREDSRERARSALFEVIEAHPDH
VPAVLLLGVIALLDDDEESVEAVVAELQGLRTSDKVQPSEHSQLGAVLSAIAALGADAAE
EEGGEVLTQAQTDIMLYPHLPHGWSRLADAGGDDYAADTALQVALKAVPPRGTLEAADLA
RAYAGTGKAADAQIAIHLAPWAREGWTALRDAISA
NT seq
4248 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgaaagcccaactgaagtccatagcggacttggtgaaacagtccaaatgggac
gacgcagtacaaaaggccaccgactttctagggaacgatcccaagaattatcaagcaaac
ctgcttcttgcgtttgctctggacaagaagagcaagtttgacgaagccgaaaaagcctac
agagcagcggcggctctcaaaccccaggacagccaggcatggcagggtctcatcaagctg
ttcgagaagcagggaccgcaaaagatctcgggttacaagcaagcagctctcagcctcgcc
gagatttggcgtgacgccgacgagatgtacaagtgtcaagacgtaattgacaagttcatt
gactacgcacgagcacacggcgaccgcacacaatacgtggacgccctagacctcatcctg
ccagacagtcccatctaccctgccctcgaaggtcgcgttgcccaccctgccaagacctac
gacactatggcgcagatcattgagacggatgaaaagaaacgcattaacacgctcattggt
gaaaggaggacaagaataggcgctcgcgttgccgaggtcacgctcgaggtcaagcgtgaa
gtgctcggcagcagcaagctcgctcacgtataccaacagctcatcatctggagcagcgat
gacgatgttcgacgaaagtatgaggagaagcttctccagtggtggcacactatgcttctc
gtgtcgcctcctggaccacaaaaagcagaggcgctgcaaacagttcttcggctttctctc
gacatggtcattatcaagcacccattccagctcgcttgggaaattgccatcaactggaaa
gacgggcccgaaatacgcgactgggacgtcaacatgctgcgagactactgcaccttcttt
cctgagacggatctgtacaaggtcatcaccggctatctgacgagctcaatctctcccttc
ccgaagcccgttccgacagacatggaagccagtgagactgaagatgagagcgaagacgac
gatggaggcggcgtgtcaatggtgccactgaccgatgacgaccggcttttcatgatgatt
gacggcatcgcgactgcagactcgatatttgcctaccgtctgatgggcgaatactaccag
cacctcgaagaacacgaaagcattgtcgagcttatgcgcaaggctcagaagcatcttgct
accgagcgcatcaggactggcgtgccattccaccacacgggcgatgcttatgcattgttc
ttgggaaccgcccttgtcttttaccaatctcctcgccaccatacggaagccaagtctcta
ttcgagggcgtcctggcgcacgacccatcctcgactgctgcactgataggcatcggtctt
atctatgaggaagaggaagactacgacgatgccgtcgacttcttggagcgggctgtgggc
cgggacccgagcaacttgcgcatcaagaccgaagcagcgtgggtgaaggcactcaaggga
gactacgaacttgcccgtgcggagcttgaggcgtcactgcccttgattgagaagaagggc
cagacttccaaggagctcctagctctgacgcagtaccgacttggttcgtgcatttggaac
ctcgacacgtccaaagcggcgcgcaagagtcggacaggagcctatgcctacttcttggac
gctctcaagaacgacctcaatttggcgcccgcgtataccagcctcggtgtctactacgct
gaatatgccaaggacaagaagcgggcaaggcggtgtttccaaaaggccgtcgagctgtct
tcgtccgaagtcaccgccgctgagcgtcttgcgcgttccttcgccgacgaaggtgattgg
gatcgcgttgaactcgttgctcagcgcgtagtcgactctggaaaggtcaagccgccgccc
ggatctaagcgaaagggcatcagctggccattcgctgcactcggtgtcgcggaactcaac
aaacaggactatcacaaggccattgtgtctttccagtctgccctacgggtgtcgccagag
gactatcattcgtgggttggcctcggcgaaagttactactcgtccggccggtacattgcc
ggcatgaaggcgacactgaacgcacaaaagttggaggagacgatctcagccgacaagctt
ggcgacacatggttcaccaagtacatgcttgctaacatcaagcgagagctaggggagtac
gatgagtctattgtcctataccgtgaggttcttgacggcagagttggcgaggacggggtg
gccattgcgctcatgcagacgctcgtagagaatgcgctcgatggtgttgaaaagggcttc
ttcggcaagtcagtggaactggcactggagaccatctcctttgcagccaaagctgatgac
agcgtcgtcaagacattcaactactggaagaccctgggagatgcgtgctctgtcttttca
gctgtgcagagccgagcggcagatttcccgggcgaggctgtcacggcaatcatcgaaaag
ggggccgaagatgcctacgccctcttggccgacatcgatcacgttgatgccactgttgtc
tctgccaagggtctgttctccgaggatgagaggctcggtgtcgacctgacgaggtgcatt
catgcgacgatcctctgccacaagcgagctatccacgagtcggcgaccgacatacacgcg
caagccgtagcgtactacaacctaggctgggccgagcaccgagcccacatctgcctgccc
tccagcatcaggaagaagtcgagcgtctatctcagggcttcgatgcgctgcttcaagcgg
gccatcgagctcgaggccggcaactcggaattctggaactcgttgggtgtcgttacgagc
gagatcagcccggccgttgcgcagcattccttcgtccgcagcgttcaccttaacgagagg
agccctgtggcgtgggctaatcttggcactctggccttgctgcagaacgatgtcaggctc
gccaacgaagcattcacgcgggcgcaatccacggatcccgactacgcacacgcgtggctg
ggccagggcttcgtcgctctgctgctcggggagccaaaggaagctcgcggcctgttcacg
cacgccatggacattgcagagtcatcgtctgctctgacgcggcggcagtactctgtggcc
atatttgaccacattctcacgacgcctctcaactttaccatctcgtcgctcatacagccc
gtgtttgcactgagccagctgaacaggctcaagccccaggatctcgcctatgggcacttg
tcgagcctcttcagagagcgaacacgggacaacgcgcctgccgtcgccgtgctggaaaag
atctgcggcgtactggagaccgactacgagctgaccgagtcggctcagtccctcgcgcgt
ttcgctctcgccaggacggatctcgctcgactgtacctggccgccggctcctacgagcaa
gccattgaatgcggcgacctggcgatccagctcagcagcgacgagtcggacaacgaactc
accatggacgagcgcaagaaggcgcggctctcagcccacctgacggtcggtctggcgcaa
tactacagccaggacatggccgagtcgctgcgctgcttcgaggcggcgctcagcgagtcg
gacaacaaccccgacgccgtctgcctcctggcgcaggtgctgtgggccgccggccgcgag
gactcgcgcgagagggcgcgctcggcgctgttcgaagtcatcgaggcgcacccggaccac
gtcccggcggttctgctcctgggcgtcatcgccctgctcgacgatgacgaggagtcggtc
gaggccgtcgttgccgagctgcagggtctccggaccagcgacaaggtgcagccgtcggag
cactcgcagctcggcgcggtgctgagcgccattgccgcgctcggcgccgacgccgctgag
gaggagggcggggaggtcctgacccaggcgcagacggacattatgctgtacccccacctg
ccgcacggatggtcgaggctcgcggatgccggcggcgacgactacgcagcggatacggca
ctgcaggtggcgctgaaggcggtgccgccacgggggacgctcgaggcggcggacctggcg
agggcgtacgccggtacgggcaaggcggcggatgcgcagattgccatccacctggcgccg
tgggctagggagggatggacggcgttgcgcgatgctatttcggcttga
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