Verticillium alfalfae: VDBG_04151
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Entry
VDBG_04151 CDS
T02227
Name
(RefSeq) ATP-dependent RNA helicase ded1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
val
Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:
val00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_04151
03041 Spliceosome [BR:
val03041
]
VDBG_04151
03036 Chromosome and associated proteins [BR:
val03036
]
VDBG_04151
Enzymes [BR:
val01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VDBG_04151
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
VDBG_04151
mRNA cycle factors
Common to processing body (P body) and stress granule
VDBG_04151
Spliceosome [BR:
val03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
VDBG_04151
Chromosome and associated proteins [BR:
val03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
VDBG_04151
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9534841
NCBI-ProteinID:
XP_003006198
UniProt:
C9SFU7
LinkDB
All DBs
AA seq
676 aa
AA seq
DB search
MADQLNINGLNIGSTQEASGRSSYIPPHMRGKMGQAPPAAAAAPVAGGPPNVNGGLNNSA
WAGNNGNNSNYGGGRGGGDWPAMGGPGGPGGPPAPAAAGGPPPHYGGGRGGGRGGWNGGD
RGYGGGYGGNAGGAGGAPAHTRGSGDGQWRDGKHIAGPANPRVERELFGTPDDPSKQHTG
INFEKYDDIPVEASGHDVPEPVLTFTNPPLDDHLISNIGLAHYKVPTPVQKYSIPIVMGG
RDLMACAQTGSGKTGGFLFPILSQAFINGPSPVPANAAGGSFGRQRKAYPTSLILAPTRE
LVSQIYDESRKFAYRSWVRPCVVYGVADIGSQLRQIERETLKYLVLDEADRMLDMGFEPQ
IRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVE
YVEDVDKRSVLLDILHTHGAGLTLIFVETKRMADSLSDFLINQSFPATSIHGDRTQRERE
RALEFFRNGRCPILVATAVAARGLDIPNVTHVVNYDLPTDIDDYVHRIGRTGRAGNTGHS
TAFFNRGNRGVVRELLELLKEANQEVPQFLETIARESSYGGGGRGRSGGGRGRGQGANRD
FRKFGGGGFSSGGGGGFGGPPSSGYSGGGGGGFGGPPPNPSYGGAGGGYGGGYGGGGGGG
GSYGNPGSGAGGQSWW
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcagctcaacatcaacggcctcaacatcggctccactcaggaggcctctggt
cgctcctcttacatcccccctcatatgcgaggcaagatgggccaggctcctcctgccgcc
gccgccgcccccgtcgccggcggccctcccaacgtcaacggcggcctcaacaacagtgcc
tgggctggtaacaacggcaacaacagcaactacggcggtggtcgcggtggcggtgactgg
cctgccatgggcggtcccggtggccctggcggcccccctgctcccgctgcggctggcggt
cctcctcctcactacggtggcggtcgcggtggtggtcgtggcggctggaacggtggtgat
cgtggctacggcggtggctacggcggcaatgctggcggtgccggcggtgctcccgcacac
acccgcggctctggcgatggccagtggcgcgacggcaagcacattgctggacccgccaac
ccccgtgtcgagcgcgagctcttcggaaccccagacgatccttccaagcagcacaccggt
atcaacttcgagaagtacgacgacattcccgtcgaggcttccggtcacgacgttcccgag
cctgtcctcaccttcacgaaccctcctctcgatgaccacctcatcagcaacattggcctt
gcccactacaaggttcccacccccgttcagaagtactctatccccattgtcatgggtggc
cgtgacttgatggcttgcgcccagactggttccggcaagactggtggtttcctcttcccc
attctttctcaggcctttatcaacggtccttcgcccgttcccgccaacgccgccggtggc
agctttggtcgtcagcgcaaggcctaccccacctcgctgatcctcgcccccacccgtgag
cttgtctcgcagatctacgacgagtcccgcaagttcgcctaccgttcgtgggttcgccct
tgcgttgtctacggtgttgccgacattggttctcagctccgccagattgagcgcgaaaca
ttaaagtatcttgtgctcgatgaggctgatcgcatgcttgacatgggtttcgagcctcag
attcgccgtatcgttgagggagaggacatgcccggcgttcagaaccgccagactctcatg
ttctccgccaccttccctcgcgacatccagatgctggcccgtgacttcctcaaggactac
gtcttcctctctgttggtcgtgttggctccacttcggagaacatcacccagaaggtcgag
tacgtcgaggacgtcgacaagcgctctgttcttctcgacattctccacacccatggcgca
ggtctcacgctgattttcgtcgaaaccaagcgcatggctgattcgctctcggacttcctc
atcaaccagagcttccctgccacttccattcacggagatcgtactcagcgcgagcgtgag
cgcgccctcgagttcttccgcaacggccgctgccccattctggttgccaccgccgttgcc
gctcgtggtctcgatattcccaacgtcacccacgttgtcaactacgatctgcccaccgac
attgacgattacgtccaccgcatcggtcgtactggtcgtgccggcaacactggtcactcc
acagcgttcttcaaccgcggcaaccgtggtgtcgttcgcgagctacttgagctactcaag
gaagctaaccaggaggttcctcaattccttgagactatcgcccgtgagtcttcctacggc
ggaggcggccgtggtaggtccggcggtggtcgtggccgtggtcagggtgccaaccgcgat
ttccgtaagttcggcggtggcggcttcagcagcggcggcggcggcggcttcggtggccct
cccagcagcggctacagtggcggcggtggcggcggcttcggaggtcctcctcctaacccc
agctacggcggtgctggcggtggctacggcggtggctacggcggcggtggcggcggcggc
ggcagctatggcaaccccggcagcggcgctggcggccagtcttggtggtaa
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