Verticillium alfalfae: VDBG_04307
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Entry
VDBG_04307 CDS
T02227
Name
(RefSeq) WD repeat-containing protein
KO
K12857
Prp8 binding protein
Organism
val
Verticillium alfalfae
Pathway
val03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDBG_04307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
val03041
]
VDBG_04307
Spliceosome [BR:
val03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
VDBG_04307
Complex C
U5 SnRNP specific factors
VDBG_04307
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
WD40_RFWD3
Beta-prop_DCAF12
Beta-prop_IP5PC_F
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
9535405
NCBI-ProteinID:
XP_003006354
UniProt:
C9SGX8
LinkDB
All DBs
AA seq
356 aa
AA seq
DB search
MSAEKRPASDEPGPRQALVKRQNVGTSSGALARLNASANGTALVKTAPRTSGLQAPVMEL
SGHSGEVFAAKFDPTGNFIASGSMDRSILLWRTYGDCENYGILKGHSGAVLDLQWSRDSR
ILFSASADMHLASWDLDNGTRIRRYVGHEEVINAMDISRRGDEVLISGSDDGSIGLWDPR
TKHAADYIQTDFPVTAVAISEAGNEVYSGGIDNDIKVWDLRKKAVVYSMLGHQDTITSLR
VSPDSQSLLSYAMDSTARTWDIRPFAPTERHIRTFDGASTGLEKNLVRASWDSAGKHVAV
GSGDGTVTIWSNDSGKLAYKLPGHKGTVNCAEFAPGSEPILLSASSDRNMLLGELR
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgaaaaacgacccgcctccgacgagccaggccccaggcaggcgctggttaag
agacaaaatgttggaacatcttcaggagccctcgcaaggctcaatgcctctgcaaacggc
actgctcttgttaagactgctcctcgaaccagtgggctgcaagcgccggtgatggagctg
tccggccattctggcgaggtcttcgcagccaagtttgatcctactgggaacttcatcgct
tcaggatccatggacagaagtatattactgtggagaacatatggcgattgcgagaattac
ggtatcctcaaagggcacagcggtgccgttttagacctccagtggtcgagagactcgcga
attcttttttcagcctcggccgacatgcatttggccagctgggatctcgacaatggcaca
cggatacggcgctatgtcggccatgaggaggtcattaatgctatggacatcagcaggcga
ggcgacgaggtgctcatcagtggcagcgatgacgggtcaatcgggctctgggatcctcga
accaaacatgcggcggactacatacaaacggattttcctgtgacggcagtcgccatatcg
gaagctggcaatgaagtctactctggcggtatcgataacgacatcaaggtgtgggacttg
cgaaagaaagccgttgtgtattccatgctcggccatcaagacacgatcacttcattgagg
gtatcccctgattcacagtcgctcctatcctatgccatggactccactgcaagaacatgg
gacatccgcccctttgcaccaacagaacgccacattcggacgttcgatggcgcctctacg
ggcttagagaagaaccttgttcgcgcaagttgggactcagctggcaaacacgtggccgtg
ggctccggggacggcactgtcaccatctggtccaatgactccgggaaattggcgtacaag
cttcctggacacaaaggcactgtcaactgcgccgaatttgcaccaggatctgaacctatt
cttctctcggcgtcttctgatcgcaatatgcttctgggcgagctacgatga
DBGET
integrated database retrieval system