KEGG   Verticillium alfalfae: VDBG_04307
Entry
VDBG_04307        CDS       T02227                                 
Name
(RefSeq) WD repeat-containing protein
  KO
K12857  Prp8 binding protein
Organism
val  Verticillium alfalfae
Pathway
val03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDBG_04307
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:val03041]
    VDBG_04307
Spliceosome [BR:val03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    VDBG_04307
 Complex C
   U5 SnRNP specific factors
    VDBG_04307
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_EIPR1 NBCH_WD40 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_Vps41 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_IP5PC_F PEP5_VPS11_N
Other DBs
NCBI-GeneID: 9535405
NCBI-ProteinID: XP_003006354
UniProt: C9SGX8
LinkDB
AA seq 356 aa
MSAEKRPASDEPGPRQALVKRQNVGTSSGALARLNASANGTALVKTAPRTSGLQAPVMEL
SGHSGEVFAAKFDPTGNFIASGSMDRSILLWRTYGDCENYGILKGHSGAVLDLQWSRDSR
ILFSASADMHLASWDLDNGTRIRRYVGHEEVINAMDISRRGDEVLISGSDDGSIGLWDPR
TKHAADYIQTDFPVTAVAISEAGNEVYSGGIDNDIKVWDLRKKAVVYSMLGHQDTITSLR
VSPDSQSLLSYAMDSTARTWDIRPFAPTERHIRTFDGASTGLEKNLVRASWDSAGKHVAV
GSGDGTVTIWSNDSGKLAYKLPGHKGTVNCAEFAPGSEPILLSASSDRNMLLGELR
NT seq 1071 nt   +upstreamnt  +downstreamnt
atgtcggccgaaaaacgacccgcctccgacgagccaggccccaggcaggcgctggttaag
agacaaaatgttggaacatcttcaggagccctcgcaaggctcaatgcctctgcaaacggc
actgctcttgttaagactgctcctcgaaccagtgggctgcaagcgccggtgatggagctg
tccggccattctggcgaggtcttcgcagccaagtttgatcctactgggaacttcatcgct
tcaggatccatggacagaagtatattactgtggagaacatatggcgattgcgagaattac
ggtatcctcaaagggcacagcggtgccgttttagacctccagtggtcgagagactcgcga
attcttttttcagcctcggccgacatgcatttggccagctgggatctcgacaatggcaca
cggatacggcgctatgtcggccatgaggaggtcattaatgctatggacatcagcaggcga
ggcgacgaggtgctcatcagtggcagcgatgacgggtcaatcgggctctgggatcctcga
accaaacatgcggcggactacatacaaacggattttcctgtgacggcagtcgccatatcg
gaagctggcaatgaagtctactctggcggtatcgataacgacatcaaggtgtgggacttg
cgaaagaaagccgttgtgtattccatgctcggccatcaagacacgatcacttcattgagg
gtatcccctgattcacagtcgctcctatcctatgccatggactccactgcaagaacatgg
gacatccgcccctttgcaccaacagaacgccacattcggacgttcgatggcgcctctacg
ggcttagagaagaaccttgttcgcgcaagttgggactcagctggcaaacacgtggccgtg
ggctccggggacggcactgtcaccatctggtccaatgactccgggaaattggcgtacaag
cttcctggacacaaaggcactgtcaactgcgccgaatttgcaccaggatctgaacctatt
cttctctcggcgtcttctgatcgcaatatgcttctgggcgagctacgatga

DBGET integrated database retrieval system