Verticillium alfalfae: VDBG_04442
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Entry
VDBG_04442 CDS
T02227
Name
(RefSeq) chromodomain helicase hrp3
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
val
Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:
val00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_04442
03036 Chromosome and associated proteins [BR:
val03036
]
VDBG_04442
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
VDBG_04442
Chromosome and associated proteins [BR:
val03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
VDBG_04442
SLIK complex
VDBG_04442
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
Helicase_C
Chromo
HDA2-3
ResIII
DUF5809
Cdh1_DBD_1
CDH1_2_SANT_HL1
AAA_22
DHR-2_Lobe_C
Motif
Other DBs
NCBI-GeneID:
9530050
NCBI-ProteinID:
XP_003004836
UniProt:
C9SJH1
LinkDB
All DBs
AA seq
1326 aa
AA seq
DB search
MSSPLQNGSSDGHRSPRMSSASPRVASPRRSISETSDQQDDAADAPSPSPDAEDSTMYMN
GGHDFAESSPSADENNASDDADFDMDDDAPNVQSDGAVDALSSSNDSQRPTKRKAGVEVQ
EDLYIKANPELYGLRRSTRPREQRKIPARHPASKVNTPIRQASADDSDSDNYGGARAKTL
QKKARRQREAQPSSLLAEKRWSSRRAAQTVQQGGYEESDFEDEETRPHRTLSYRKLENYF
RVVVDHELFIRFGFDIPPETKEQFFLDRERVEEALEDYTKVDRVVAVRDGDEETEYLVKW
KGCYYDECTWEVASAISTDFQVKIDQFLDRSSRQWVSDRTETNPDTRTRMTKLEAQPDYI
KGGELRTFQLRGLNFLCLNWTRANNVILADEMGLGKTVQSVSFMSWLRNDREQEGPFLIV
APLSVIPAWGDTFDNWSPDMNYVVYLGNEASRQTIRENELMINGNSKKPKFNALITSYEM
ILHDWSFLQTIKWQALLVDEAHRLKNKESQLYAKLVSFGVPCKILITGTPIQNNLAELSA
LMDFLNPGKVIIDEELETLTGADTQEKLQDLHTSIAPYILRRTKETVESDLPPKTEKIIR
VELSDVQLEYYKNILTRNYAALSDATGQKNSLLNIMMELKKVSNHPYMFGGAEDRVLAGS
TRREDQVKGLIASSGKMMLLDQLLTKLKKDGHRVLIFSQMVKMLDILGDYLALRGYKFQR
LDGTIAAGPRRMAINHFNAEGSDDFCFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQ
AMGRAHRIGQKKPVSIYRLVSKETVEEEVLERARNKLLLEYLTIQAGVTDEGKAFRDEFN
KKGLKMDGPSSADDIQWILKMRSQKMFEQTGNQERLEQLDIDSILENAEVTKTKVDDKMN
LSSGGIDWDNFMQYTDVKVDDLALDWDQIIPVEELENIKAEEEKRRHEAYLAKVAAESAP
RRAAVKNRHSENDRADRVAKKRQREEQQRQEAEEQRALLSDPRRPLNEKETRNLLKAFYR
YGAMEDRGDEIVHEARLTERDREFLSSIIDDFTKVCGQALDDNYSRLEEDERKLGKSLTK
KDKKAVLIDFGEVRKMNAETAIERPKQLRLLRQVLRKNNDDKSFRLPDASKAAHYSCEWG
AREDGMLLVGIDRYGFGAWTQIRDDAGLDLQDKFFLEEHRVEKKEERNKASEKSINSPGA
VHLVRRSEYLLSVLQSKHSTDAATLKAVENHHRNNKKHLNGGRRSELGSAAASPAPHLSK
KNSSHRDRERERDHHREFLATLWPVDSTSNPVTADRLSFLYRTIRDREQSDAKKKAQNSN
GTAATS
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgtctagccctctccagaacggctcctcggacgggcatcgatcgcctcgaatgtcctcc
gcctccccccgcgtcgcgagcccccgccgaagcatcagcgagacctccgatcagcaagat
gacgcggcggacgccccgtcgccctcgcccgatgccgaagactcgaccatgtacatgaat
ggcggtcatgactttgccgaaagtagcccttcagccgatgaaaacaacgcgtcagatgat
gccgacttcgacatggatgacgatgctcccaatgtacagagcgacggcgctgtcgacgcg
ttgtctagctccaacgactcccaaaggcctacaaaacgaaaggctggtgtcgaagttcaa
gaagacctctacatcaaggccaatccagagctgtatggtctgaggagaagtacgcgacca
agggagcagcgcaagatccctgcccgccatccagcctcgaaagtcaacacccctattcga
caggcatcagccgacgattcagactcggacaactatggtggcgctcgagcgaaaactctg
caaaagaaagcccgccgccagcgcgaggcacaaccatcctcactgttggccgagaagagg
tggtccagtcggcgcgctgcccagaccgtgcaacaaggcggctacgaagagagcgacttc
gaagacgaagagacgaggccgcacaggacgctcagctaccggaagctcgagaactacttt
agagttgtcgttgatcatgagctcttcatccgattcggattcgacatcccgcctgagacc
aaagagcagtttttcctggatcgagagcgtgttgaagaagcccttgaagattacaccaag
gtggatagagtggtagctgttcgagacggcgatgaggagacagagtatctcgtcaagtgg
aagggctgttactatgatgagtgcacctgggaagttgcctcagccatcagcaccgacttc
caggtcaagatcgatcagtttcttgaccgatcctctcgccaatgggtgtcagatcggacc
gagaccaatccagacacgcgtacaagaatgacgaagcttgaagcccaacccgattacatc
aagggtggtgagctacggaccttccagctccgtggtctgaacttcctctgtctgaactgg
acgcgggcgaataatgttattcttgccgatgaaatgggtctcggaaagacggtccaaagc
gtgtcattcatgagctggcttcgcaacgaccgcgaacaggaaggtcccttccttattgtc
gctccccttagtgtcatcccagcatggggtgataccttcgacaactggtctccggacatg
aactatgtcgtttatcttggcaacgaggcctctcgccaaactatccgcgagaatgagcta
atgatcaacggtaactcgaagaagcccaagttcaacgctctcatcacctcgtacgagatg
attctgcatgactggtcattcctgcaaaccatcaagtggcaggctctgctggtcgacgaa
gcacaccgtctcaagaacaaggagtctcagctatatgccaagctggttagcttcggcgtt
ccctgcaagatcttgattaccggtaccccgatccagaacaacctcgccgagctttcggct
ttgatggacttcttgaatccgggtaaagtcatcatcgatgaagagctcgagactctcacc
ggtgctgacacccaggaaaagttgcaggacctacacacctcgatcgccccgtatattctt
cgtcgtacaaaagagacagtggagtctgaccttccaccaaagacggagaagatcatccgc
gtcgaactctctgacgtgcaactggaatactacaagaacatcttgacccgcaattacgcc
gccttgtccgacgctaccggtcagaagaattcgctcttgaatatcatgatggaactgaag
aaagtcagtaaccatccttacatgtttggcggagccgaggacagggttctcgcaggcagc
actcgtcgagaggaccaagtcaaaggtctcattgccagtagtggaaaaatgatgctgctc
gatcagctcttgacaaaactgaagaaagatggccaccgagtcctcattttcagccagatg
gtgaaaatgcttgatattctcggtgattatcttgccctgagaggctacaagttccaacgt
ctggatggcacgattgcggctggtcctcgccgtatggcgatcaaccatttcaacgccgag
ggaagtgacgacttctgtttcctgctttctacgcgtgctggtggcctgggcatcaacttg
atgaccgctgacactgtcgtgatttttgactcggactggaacccgcaggccgatctgcaa
gccatgggccgcgcgcatcgtattggccagaagaagccggtcagcatttaccgtctcgtt
tccaaggaaactgttgaggaggaggtacttgaacgggcgcgcaacaagcttcttcttgag
tacctcaccatccaggccggtgtcactgatgaaggcaaggccttccgcgatgagttcaac
aagaagggcttgaagatggatggtcccagctcggccgatgacattcagtggatcctcaag
atgcgctcgcaaaaaatgttcgagcagactggtaaccaggagcgtcttgaacaactggat
attgactccatcttggaaaatgctgaagttaccaagacaaaggtcgacgacaagatgaac
ctcagcagtggtggcatcgattgggacaacttcatgcagtacaccgacgtcaaggtcgac
gatctggctcttgattgggaccagatcatccctgtcgaggagcttgagaatatcaaggct
gaggaggagaagcgccgtcacgaagcttatctcgccaaggtcgccgccgagagcgcacca
cgccgagccgccgtgaagaaccgccatagcgaaaatgacagagctgaccgcgtcgccaag
aagcggcagagggaagaacagcaacggcaagaggccgaggagcagagggctctactgtcc
gatcccagacgtcctttgaacgagaaggagactcgcaaccttctcaaggcattctatcgt
tacggagccatggaggaccgtggtgatgagattgtccatgaagcccgcctgacggaacga
gacagagagttcctgagctccatcatcgatgactttaccaaggtctgcggtcaagctctg
gatgacaactactcgaggcttgaggaagatgaacggaagctcggaaagtctttgacaaag
aaggacaagaaggcagtcttgattgactttggagaggttcgcaagatgaatgccgagaca
gccattgaacggcccaagcagctgcgccttctccgtcaagtcctgcgcaagaataacgac
gacaagtcttttcgtctaccggacgcctccaaggcagcccattacagttgtgaatggggt
gctagggaagacggtatgctcctggttggcattgaccggtatggcttcggtgcctggaca
caaattcgcgacgatgctggcttggatctgcaagacaagttcttcttggaagagcatcgt
gttgagaaaaaggaggagcgcaataaggccagcgagaaaagtatcaactctccaggcgcg
gtccatctggtccgccgttctgaataccttctttccgtcttgcagtcgaaacattccacc
gacgctgccacactgaaggctgtggaaaatcaccacaggaacaataagaagcacctcaat
gggggccgacgcagtgaacttggtagtgcggctgcatcacctgctcctcacctgagcaag
aagaacagtagccaccgggaccgggaacgagaacgtgatcatcacagggaattcttggct
acgctgtggcctgttgacagcaccagcaaccccgtgactgcggacagacttagcttcctg
tacagaaccatccgcgatcgggaacagtcggacgcgaagaagaaggcgcagaactcgaac
ggcacagccgctacctcttag
DBGET
integrated database retrieval system
