Verticillium alfalfae: VDBG_04674
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Entry
VDBG_04674 CDS
T02227
Name
(RefSeq) RNA binding domain-containing protein
KO
K12881
THO complex subunit 4
Organism
val
Verticillium alfalfae
Pathway
val03013
Nucleocytoplasmic transport
val03015
mRNA surveillance pathway
val03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDBG_04674
09122 Translation
03013 Nucleocytoplasmic transport
VDBG_04674
03015 mRNA surveillance pathway
VDBG_04674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_04674
03041 Spliceosome [BR:
val03041
]
VDBG_04674
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
VDBG_04674
TREX complex
VDBG_04674
Spliceosome [BR:
val03041
]
Complex C
Other components
EJC/TREX
VDBG_04674
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
VDBG_04674
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
9530285
NCBI-ProteinID:
XP_003005068
UniProt:
C9SHZ2
LinkDB
All DBs
AA seq
326 aa
AA seq
DB search
MSANMDRSLDEILAEKKSDQPRNRRRGGGGGHRDGGRDGGRDGGRDGGRDSGRDGGGRSY
RRDERYDYPRDGVKKSYRDDSRHLDSEWVHDRYEEDYKAKGLFNRIGPVVRLNLRYDRAG
RSEGVAYVTYEHPDDARQAIREFDGANAKWFVHGSQLIGVTTWTTDNFTGQPIRLSIVPN
GRDSRLRGGRNPFDTAVMPGRPLADRISVPYGRSRSLSPSRNQDLDDAVTKGIDRYVPGR
RSRSPMPRRRGGGGGRRPGARREEGRDQQGSRGPERTRGGRPKKTAEELDDEMADYFGGG
SAGPAETGAAEKTAAPAAVDDMDMIE
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccaacatggatcgcagcttggacgagatccttgcggagaagaagagcgatcaa
cctcgcaaccgccgacgaggtggcggaggcggtcaccgcgatggcggccgagatggcggc
cgagatggtggccgggatggcggtcgtgacagcggtcgtgatggaggtggccggtcctac
aggcgcgacgagcgttacgactaccctcgtgacggtgtcaaaaagtcttaccgcgacgac
tcgcgccaccttgacagcgaatgggttcatgaccgttacgaagaagactacaaagcgaag
ggcttgttcaataggatcgggcctgtcgtcaggctgaatcttcgctacgaccgcgcgggt
cgatctgagggcgttgcatatgtcacttatgagcaccctgacgatgcccggcaggcgatt
cgggagttcgatggtgccaacgccaaatggttcgtccatggctcgcaactcattggcgta
acgacatggacgactgacaacttcacaggccaaccgatccgactctcaattgtgcccaac
ggacgtgactcgcgccttcgtggcggacgcaaccccttcgacactgccgtgatgccgggc
cgtcccctcgctgaccgcatctcagtgccgtacggtcggtcccgatctctctcgccgtcc
cgcaaccaggacctcgatgacgctgttactaagggcattgatcgctatgttcctggcagg
cgctcccgtagccctatgcccagacgacgcggcggcggcggtggacgccgtcccggtgct
cgcagagaggagggtagagaccagcagggaagccgcggtcccgaacgcacaaggggcggc
cggcccaagaagacggcagaggagctcgacgacgagatggcggattactttggcgggggc
tcagctggccctgccgagactggtgctgctgagaagacggccgctcctgctgctgttgat
gatatggatatgattgagtga
DBGET
integrated database retrieval system
