Verticillium alfalfae: VDBG_04724
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Entry
VDBG_04724 CDS
T02227
Name
(RefSeq) N-glycosylase/DNA lyase
KO
K03660
N-glycosylase/DNA lyase [EC:3.2.2.-
4.2.99.18
]
Organism
val
Verticillium alfalfae
Pathway
val03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VDBG_04724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_04724
Enzymes [BR:
val01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VDBG_04724
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VDBG_04724
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OGG_N
HhH-GPD
HHH
Motif
Other DBs
NCBI-GeneID:
9530337
NCBI-ProteinID:
XP_003005118
UniProt:
C9SI42
LinkDB
All DBs
AA seq
412 aa
AA seq
DB search
MAPVRVTEWRKLPLSLTELCIDTTLRCGQSFRWRKINDEWCCTLHGRIISLKQDPTHLHY
RSIWPAAAQRPQTAPTVKTESSEDDTEELLKHYLSLKLDLTSLYEQWSEADANFRKRAPK
FGGVRMLSQDAWEALISFICSSNNNISRISQMVHKLCLHYGPLIGHINEEPFHDFPTPDA
LTGKQVESHLRELGFGYRAKYIAETARVVSSEKPKGWLASLANPANPNIRAASEAEDEKI
VSPPTYKEAHEALLALAGVGPKVADCVCLMGLGWGEAVPVDTHVWQIAQRDYKFGKSRTK
TFSKAMYDAVGDHFRQLWGEYAGWAHSVLFTADLKTFEGRVAKKEEEEVLAVKGEAGEDA
IVKIKREVVEDEASPPLTGKKRKTVQTKVKIEVEEAADAHPKRRRTRSQKAL
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggcccccgtcagggtcaccgagtggcgcaagttgccactgagcctcacagagctttgt
atcgatacaacactgcgctgcggccaatcctttcgatggcggaagatcaatgacgaatgg
tgctgcacgctgcatggccgaatcatctcactgaagcaagacccgactcaccttcactac
cgctcaatctggcccgccgcagcccagcgaccccaaaccgcaccaaccgtgaagacggag
tcttcagaggacgacacggaggagctgctcaagcactatctcagcttgaagctggacctg
acgagcttgtatgagcagtggtcagaagcggacgccaatttccgcaagagggcacccaag
tttggaggtgtccgcatgctgagccaggatgcgtgggaggccctaatcagcttcatatgc
agcagcaacaacaacatatccaggatatcacaaatggtacacaaactctgtctgcattat
ggcccgctcatcgggcacatcaacgaggagcctttccacgatttccccacgccggatgcc
ctgacgggcaagcaggtcgagtcgcacctccgcgagctcggtttcggctatcgcgccaag
tacatcgccgagacggcacgtgtcgtttcctcggagaagcccaaggggtggctggcaagc
ctggcgaacccagcgaacccaaatatccgcgccgcatccgaggccgaggacgagaagatc
gtgtcaccaccgacgtacaaggaggcacacgaggcgctgctcgccctcgctggcgtgggt
cccaaggtggcagactgcgtgtgtctcatgggccttgggtggggggaggctgtgcctgtg
gacacgcacgtgtggcagattgcgcagagggactacaagtttggcaagagcaggacgaag
acgttcagcaaggccatgtacgatgcggtgggagatcactttcggcagctgtggggggag
tatgcggggtgggcgcattccgtcttgttcacggccgatctcaagacgtttgaagggagg
gtggctaagaaagaagaggaggaagtgttggctgtgaagggagaggctggcgaggatgcg
attgtaaagattaagcgggaagtcgtggaagatgaggcgtccccgcctttgacgggaaag
aagcgcaagactgtccagacgaaggtcaagattgaggttgaggaagcggcagatgcacac
ccaaaacggaggaggactcggtctcagaaggcactgtga
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