KEGG   Verticillium alfalfae: VDBG_04888
Entry
VDBG_04888        CDS       T02227                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
val  Verticillium alfalfae
Pathway
val03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    VDBG_04888
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:val03041]
    VDBG_04888
Spliceosome [BR:val03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    VDBG_04888
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd PRP4 ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_EML Beta-prop_HPS5 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_RIG_1st WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_Vps41 WDR54 Beta-prop_DCAF12
Other DBs
NCBI-GeneID: 9530502
NCBI-ProteinID: XP_003005282
UniProt: C9SIK6
LinkDB
AA seq 515 aa
MMHPSRQAYVEEMDEDRGIALEDVPLDHDYEIPSASAGVAPEKASAVMAQFERKRLAASI
AVPTDDGRVRAKLRELGEPVTLFGEGPAERRDRLRQLLAIQKELAGLEDGDVAMEDAGDQ
EDEEQEEEFYSRGGPDLLKARVDIAKFSLPRAKRRAKFQKAEATIPLRTHVKFRKEIKEK
LDAFELQGSQTAGDRHVSMTRLSPNGEIAAVGNWGGAVKLLEIPSLTEKMNLRGHTNKIS
GLSWYPGSTLPECNVSPDSVNLASGGAEGTINLWSLNQDTPLSTLQGHSARVCRVEFHPS
GKYLASASEDTTWRLWDIETTAEVLLQEGHSRGVYAVSFNSDGSLLASAGLDSIGRIWDL
RSGRTVMILDEHIKPIHALDWGADGHRVLTGSADGWIKCWDVRKVQRTGGLGAHTSAVSD
LRWFKGLDDPVDGAPPGVDEKGAQLPKKSGTFLVSSGFDAKVKVFSADNWGLIQTLSGHT
GPVASVDVSRDGKWIVSGGHDRTVKLWGRNDMEGL
NT seq 1548 nt   +upstreamnt  +downstreamnt
atgatgcacccgtcgcgccaggcgtatgtggaggagatggacgaagaccgggggatagct
ctcgaggatgttcccctcgatcacgattacgagatcccttccgcctccgctggtgtcgcg
ccagaaaaggcgtctgccgtcatggctcagtttgagcgcaagcgattggcagccagtatc
gctgtcccgaccgacgatggacgagtacgcgccaaattgcgggagctaggagaacctgtc
accctgtttggcgaaggtcccgccgaacggagagatcgattgcgacagcttcttgctatt
cagaaggagcttgctggcttggaggacggcgatgtcgccatggaggatgcaggcgaccag
gaagacgaggagcaagaagaagagttctattcgcgcggtggaccagacctattgaaggct
cgcgtcgacattgcgaaattttctctcccccgtgcgaaacgacgcgccaaatttcagaag
gcggaggcgacaataccgctccgaacacacgtcaagttccgcaaagagatcaaggagaag
ctcgatgcctttgagcttcagggaagtcagacagcaggcgaccgtcatgtgagcatgaca
aggctatcacccaatggcgagatagcggctgttggtaactggggcggagccgtgaagctt
ctcgagatcccatcacttacagagaagatgaatttgagaggacacaccaacaagatcagc
ggtctgtcctggtaccctgggtctacgttgccggaatgcaacgtctccccagactcggtc
aatcttgcttcaggcggtgctgagggtactatcaacctctggtccctcaaccaagacacc
cctctctccactctccaaggccacagcgcacgggtgtgccgtgttgaatttcacccgtct
ggaaagtatttggcatctgcctccgaagacacgacgtggcggctttgggacatcgagacc
acggctgaggtgttactgcaagaaggacattcccgaggcgtctacgccgtgagcttcaac
tcggacggatcactgctcgctagtgctggtcttgacagcatcggccgcatttgggatctc
cggtcaggcaggactgtgatgattttagacgaacacatcaagccaattcatgctctggac
tggggtgccgacggccacagagttcttacgggctcagcagacggttggatcaagtgctgg
gatgtaagaaaggtccagaggaccggcggcctcggtgcgcatactagtgcagtgtccgat
ctgagatggttcaaggggcttgacgatcctgtggacggtgctccgccgggagtcgatgag
aagggtgctcagctgccgaagaagtccgggaccttcttggtttccagtggcttcgacgca
aaagtcaaggttttctctgccgataactggggtctcattcaaacgttgagcggtcatacg
ggacctgtagcgagtgttgatgtgagtagagatggcaagtggattgtcagtggagggcat
gaccggactgtcaagctctggggtcgtaacgatatggaaggtctttaa

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