Verticillium alfalfae: VDBG_05116
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Entry
VDBG_05116 CDS
T02227
Name
(RefSeq) pre-mRNA-processing factor 31
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
val
Verticillium alfalfae
Pathway
val03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VDBG_05116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
val03041
]
VDBG_05116
Spliceosome [BR:
val03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
VDBG_05116
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
9535759
NCBI-ProteinID:
XP_003004003
UniProt:
C9SJY9
LinkDB
All DBs
AA seq
582 aa
AA seq
DB search
MSTLADELLQDFEDSGSENENEERQDDELGVAPSASGGLLGNGNGLNDMDVDNADGAEDD
DEEMNGIPRSASDAVEDAEDAKAKVEKMQLGAVDDVRSVASLMQTLEPVLEKIAQYQSQP
AASRVIGNIEDHPEYHLLTQSNSLSTLIDGEIILVHKYIRDHYSIRFPELETLITNPVEY
AKVVSILGNGPLDSENIKALQTSTDNPLKSTLKSVLDGPSLMIVTVEATRARVATCRMNL
FAPNLTVLIGSLTAAQLLNAAGGLTGLSKTPACNIAAWGSKKGAGAAGMATNIGIRQQGF
LYHSSIVQGIPNDLKKQAMRIVSAKLVLAARVDRIHSSPDGATGEELKSACLERLEKLTE
PPPNKGARALPAPDEKLSRKRGGRRARKAKEATAMTELRKAQNRMAFGKEEREVGYGTGE
GTVGMGMIGQGSEGKIRNLQVDQRTRAKLSAKNKGWGAASSLGGAASSFRGFGQAGASSM
DLRGKGLRTSGVGSSLGGTGTGVASSLAFTPVQGLELVDPKMQAELSRKRKAEEDRWFKG
GTFTQVGGADTSAGGGFKKPGQPPSKKAKTGAGMMAPPPRKT
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacacttgcagatgagctcctgcaagatttcgaggactcgggctccgaaaacgaa
aacgaagagagacaggatgacgagcttggcgttgcgccgagcgccagtggtggcctactc
ggcaatggcaacggcctgaacgacatggacgtcgacaacgcagacggcgccgaagacgat
gacgaggaaatgaacggtatccctcggagcgcgtccgacgcggtcgaggatgccgaggac
gccaaagccaaagtcgagaagatgcaactcggcgccgtagacgacgtccgcagcgtcgcc
agtctgatgcagacccttgagccagtgttagagaaaatcgcccagtaccagtcgcaacca
gcggcgtcgcgcgtgatcggcaacatcgaagaccatcccgaatatcaccttttgacgcag
tcgaacagtctttctacgctcatcgacggcgagatcatcctcgtgcacaaatacattcgc
gatcactactccatccggttcccggaactcgaaacgctcatcacaaacccggtggaatat
gccaaggtcgtgtcgatcctcggcaacggccctctggactcggagaacatcaaggcgttg
cagacgtcgacagacaaccctctcaaaagcacgctcaagtctgtgcttgacggaccctcg
ctgatgattgtcaccgtcgaggctacccgagcaagggtcgcgacatgtcggatgaatctt
ttcgcgcccaacctgacggtcctcatcggctcgctgacggcggcgcaactgctgaacgct
gccggtggactcacgggcctttcgaagacgccggcctgcaacattgcggcgtgggggtcc
aaaaagggggccggcgccgccggcatggccaccaatatcggaatccggcagcaggggttc
ctgtaccactcctccatcgtgcaggggatccccaacgacctgaaaaagcaggcgatgcgc
atcgtctccgccaagctcgtcctcgccgcacgggtcgaccgcatccactcgagcccggac
ggcgcgaccggcgaggagctcaagtcggcgtgcctcgagcggctcgagaagttgacggag
cctccgcctaacaagggcgcccgcgcgcttccggcgcccgacgaaaagctctcgcgcaag
cgcggtggcagacgcgcgcgcaaggccaaggaggcgacggccatgacggagctccgcaag
gcgcagaaccgaatggcgtttggcaaagaggagagagaggtcggctacggcacgggcgag
ggcacggtgggcatgggcatgatcgggcagggcagcgagggcaagatcaggaacctgcag
gtcgaccagcgcacgcgggccaagctcagcgccaaaaacaagggctggggcgctgcctcg
tcgctgggcggcgcggcctcgtccttccgtgggttcggccaggcgggcgcctcgagcatg
gacctccgtggcaagggtctccgcacgtcaggcgtgggctcgtcactgggtggcaccggc
acgggtgtggcatcgtcgctggcgttcacgccggtgcagggccttgaactcgtcgatccc
aagatgcaggctgagctcagcaggaagcgcaaggcggaagaggaccgatggttcaagggg
ggcaccttcacccaggtcggcggcgcggataccagcgctggtggcggcttcaagaagccg
ggacagcctcccagcaaaaaggcgaagacaggcgctggcatgatggctccccctccacgc
aaaacttag
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