KEGG   Verticillium alfalfae: VDBG_05130
Entry
VDBG_05130        CDS       T02227                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
val  Verticillium alfalfae
Pathway
val03020  RNA polymerase
val03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VDBG_05130
  09124 Replication and repair
   03420 Nucleotide excision repair
    VDBG_05130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:val03021]
    VDBG_05130
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_05130
Transcription machinery [BR:val03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     VDBG_05130
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      VDBG_05130
SSDB
Motif
Pfam: RNA_pol_Rpb4 Telomere_res GapR_DNA-bd MIF4G_like_2
Other DBs
NCBI-GeneID: 9535775
NCBI-ProteinID: XP_003004017
UniProt: C9SK03
LinkDB
AA seq 160 aa
MADQGDSTLIPPRKQERKRFKPTSRPRPPVPGQEKAEAVLELGEFQEVDTLTLSEASLVI
NALVTKRRMDRKNVNETEMLTQTLNYLDAFSRFRQKENVEAVERLLSAHKQLAKFERAQI
GSLCCETAEEAKTLIPSLQDKITDEDLQELLDEISKLQSR
NT seq 483 nt   +upstreamnt  +downstreamnt
atggccgaccagggcgactcgacactgatcccgccccggaagcaggagcgcaagcgcttc
aagcccacctcgcgcccccgccccccggtccccggccaggagaaggccgaggccgtgctc
gagctgggcgagttccaggaggtcgacacgctgaccctctccgaggcctcgctcgtcatc
aacgccctcgtcaccaagcgccggatggatcgcaagaacgtcaacgaaaccgagatgctc
acgcaaaccctcaactacctagatgccttctcgcgcttccgccagaaagaaaacgtcgag
gccgtcgagcgactgctcagcgcccacaagcagctcgccaagtttgagcgcgcgcaaata
ggctctctctgctgcgagacggccgaagaggccaagacgctcatcccgtccctccaagac
aagatcaccgacgaagacctccaggagcttctcgacgagatcagtaagctgcagagcagg
tga

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