KEGG   Verticillium alfalfae: VDBG_05277
Entry
VDBG_05277        CDS       T02227                                 
Name
(RefSeq) endoribonuclease YSH1
  KO
K14403  cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
val  Verticillium alfalfae
Pathway
val03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    VDBG_05277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:val03021]
    VDBG_05277
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_05277
Transcription machinery [BR:val03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     VDBG_05277
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     VDBG_05277
    U7-dependent histone pre-mRNA processing factors
     VDBG_05277
SSDB
Motif
Pfam: CPSF73-100_C Beta-Casp Lactamase_B_6 RMMBL Beta_lactamase3
Other DBs
NCBI-GeneID: 9531143
NCBI-ProteinID: XP_003004164
UniProt: C9SKF0
LinkDB
AA seq 730 aa
MTHPTKAIYKWLIQDSVRVGNTSSNPSTQPVYTEADHMNTFPQIEAIDYHTTHTISSIRI
TPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREQDRHLVSAEVPKGVKIDVLITESTYGIA
SHVPRVEREQALMKSITSILNRGGRVLMPVFALGRAQELLLILDEYWGKHPDFQKYPIYY
ASNLARKCMVVYQTYVGAMNDNIKRLFREGMAQAEASGDGSGKGGPWDFNYIRSLKNLDR
FDDLGGCVMLASPGMLQNGVSRELLERWAPNDKNGVIITGYSVEGTMAKQIMQEPDQIQA
VMSRTMANARRGPGGDGEKFLIPRRCSVQEYSFAAHVDGTENREFIEEVAAPVVILVHGE
QHNMMRLKSKLLSLNANKSIKAKIFSPKNCEELRIPFKQDKTAKVVGKLATIQPPTKSTL
EDGQNAPLITGVLVQNDFKLSLMAPEDLREYAGLNTTTITCKQRLKLSAAGIDLIRWGLE
GVFGTVEELPEMHKKKLSKTHDGDHEEADENTNEVPKQEEADEEVASLVAAYLLMGCVTF
RYRSDGEVELEWEGNLLNDSIADAVLTCLYSVESSPAAVKRSGNTHQHDHGPTGHNPHAN
LSPEERLERFLMIVENQFGADNVNPVADPKLPVTSKDDAKGEDEGEDADPSAMDTSNDGG
DKDLDERRRAELDRLHKLGIPVPGIHIKVDKMEATVWLEDLEVDCVHKAFADRVRRVCER
AAEVTAPLWG
NT seq 2193 nt   +upstreamnt  +downstreamnt
atgacccatcccacaaaggccatttacaagtggctcatccaggacagcgttcgggtcgga
aacacttcatccaacccttcgacgcaacctgtctataccgaagcagatcatatgaacacg
ttccctcaaatcgaagccatcgactaccacaccacccacaccatctcctccattcgcatc
actccctaccccgcagggcatgtcctcggcgcggctatgtttctgatcgagatcgcgggg
ctcaaaatattcttcacgggtgactactctcgagaacaggatcgacatcttgtgtcagcg
gaggttccaaagggtgtcaaaatcgatgttctcatcaccgagtcgacgtacggtatcgcg
tcacacgtgccgagagtggaaagagagcaagctctcatgaaatcaattacaagcatcctc
aaccgtggcggccgcgttctgatgcctgtgttcgccctcggtcgagctcaagaattactg
ctcattctcgacgagtactggggcaagcaccccgacttccagaagtaccccatctactac
gccagtaaccttgcccgaaagtgcatggtcgtttatcagacgtatgtgggagccatgaat
gacaatatcaaaagactcttccgcgaaggaatggcacaagcagaagcatcaggtgacggc
agtggcaagggtggtccgtgggatttcaactatattcgatcgctgaaaaatcttgatcga
ttcgatgacctgggtggttgcgtgatgctggccagcccgggtatgctgcaaaatggagtc
agccgagagctgctggaaaggtgggcgccaaatgacaagaacggcgtcattatcaccggt
tacagtgttgagggtaccatggccaagcagatcatgcaggagccagatcagatccaagcc
gtgatgagcaggaccatggccaatgctcgtcgcggtcccggtggagacggagagaagttt
ttgattcccaggaggtgcagtgtacaggaatactcatttgccgcacacgtcgacgggacg
gaaaaccgcgagttcattgaggaggttgctgctccagttgtaatccttgtccacggcgaa
cagcacaacatgatgcgcctcaagtccaagcttttgtctctaaacgcaaacaaatccatc
aaggccaagatcttcagtcccaaaaattgcgaggaactccgcattccattcaagcaggat
aagacagccaaggttgtcggcaagctagccacaattcaaccgcctacgaagagcacatta
gaggatggccagaacgcccccctaatcacaggcgtccttgtccagaacgacttcaagctg
tctctgatggcacccgaggacttgcgtgaatacgctggtctcaataccacgaccatcacc
tgcaagcaacgcctcaagctcagcgccgccggcattgaccttattcggtggggccttgag
ggcgtattcggcaccgttgaggaacttcccgagatgcacaagaagaagctcagcaagacg
catgatggcgatcatgaagaagcagatgaaaacacaaacgaagtccccaaacaagaggag
gccgatgaagaagtggcgagcttagtagctgcataccttttgatgggctgcgtaacattc
cgctaccgtagcgacggcgaagttgagcttgagtgggaaggcaaccttctgaacgacagc
attgcagacgctgtactgacctgtctctactcggtggagagcagccccgctgccgtaaag
cgttccggcaacacacaccagcatgaccacggacccacaggccataacccacacgctaat
ctttctcctgaggaacgactcgagcgattcctcatgattgtggagaaccaattcggcgct
gacaatgtcaatcctgttgcggatccgaagttgcctgttacttcaaaggatgatgctaag
ggcgaggacgagggcgaggacgctgatccttctgccatggacacgtcaaatgatggcggg
gacaaagatcttgatgaacgtcgccgcgcagaacttgatcgtctgcacaaactgggtatc
cctgttccaggaatccacatcaaggttgataagatggaggctaccgtatggttggaagat
ttagaggttgattgtgttcacaaggcgtttgcggatcgtgtgcgccgcgtctgtgaacgt
gccgccgaggttacggcgccgttgtggggttga

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