Verticillium alfalfae: VDBG_05430
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Entry
VDBG_05430 CDS
T02227
Name
(RefSeq) ATP-dependent rRNA helicase SPB4
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
val
Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:
val00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
val03009
]
VDBG_05430
Enzymes [BR:
val01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VDBG_05430
Ribosome biogenesis [BR:
val03009
]
Eukaryotic type
Pre-60S particles
Helicases
VDBG_05430
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
9531301
NCBI-ProteinID:
XP_003004317
UniProt:
C9SKV3
LinkDB
All DBs
AA seq
425 aa
AA seq
DB search
MAPSATVTEKKKGPQRLAWSYPSPGRGYQRMTPVQAATIPQFLGNKDVVVEAVTGSGKTL
AFLLPIVQKLLRLSEPTKRGHVFAIIVSPTRELAQQIYNVLMGLIAFHTASSEMLPFLKE
DDKRPDSAVPIAVPQLLVGGTTTTQQDLSFFVRHSPNILVSTPGRLVELLASPHVHCSQS
TFDMLVLDEADRILDMGFRQDLQRILSHLPKQRRTGLFSASVSEAVSQIITVGLRNPVKI
AVGVKSLRDGNIIEDRKIPASLQMAYLLTPASQKMPALAQILDKLNPRPQRSIIFLSTCA
AVDYFQHILPDMLPAGFSLVPLHGKLPPKVREKSFNRFLTSVSPSVLLCTDLAARGLDIP
QVDFVCQVDPPSDPKVFIHRAGRAGGPGRKGFAVVLLPPGRGGGILVPFLAARKRPIHPL
DDPPR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggcgccctcagcgacggtcacagagaagaagaagggaccccagagactggcgtggtct
tacccctcccctggcagaggctatcagcgcatgacgcctgttcaggccgccactattccc
cagttcctcggcaacaaggacgtcgtcgtcgaagctgtcacaggcagcggcaagaccctg
gcatttctgctccccatcgtgcagaagctgctccgcctctccgaacccaccaagcgtggc
catgtcttcgccattatcgtctcgccgactcgcgagctcgctcagcagatttacaacgtt
ctcatgggcctcatcgccttccacactgcctcctcggagatgcttcccttcttgaaggag
gatgacaagcgccccgactcggccgtgcccatcgccgtgccccagctgctcgtcggaggc
acgaccacgacgcagcaagatctcagcttcttcgtgcgtcactctcccaacattctcgtc
tccacgcccggccgcctcgtcgagctcctcgcctcgccccacgtccactgcagccagtcc
acctttgacatgctcgtcctcgacgaagccgatcgcatcctcgacatggggttccgccag
gacctccagcgcatcctctcccacctccccaagcagcgccgaaccggtctcttcagcgcc
tccgtctccgaggccgtctcccagatcatcactgttggcctgcgcaaccctgtcaagatc
gctgtgggcgtcaagtccctccgcgacggcaacatcatcgaagaccgcaagattcccgcc
tctctgcaaatggcatacctcctcacgccggcctcccagaagatgccggccctcgcccag
atcctcgacaagctcaacccgcgcccccagcgcagcatcatcttcctctccacctgcgcc
gccgtcgactacttccagcacatcctccccgacatgctccctgccggcttctcccttgtg
cccctgcacggcaagctgccgcccaaggtgcgcgaaaagtccttcaaccgcttcctcacg
tccgtctccccttcggtcctcctctgcaccgacctcgccgctcgtggcctcgatattccc
caggtcgactttgtctgccaagtcgacccgccctcagatcccaaggtcttcatccaccgc
gccggccgcgccggcggccccgggcgcaagggcttcgccgtcgtcctccttccacccggg
cggggaggaggaattttggtccctttcctcgccgcccgcaaaaggcccatccacccgctt
gacgaccccccaaggtga
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