Verticillium alfalfae: VDBG_05562
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Entry
VDBG_05562 CDS
T02227
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
val
Verticillium alfalfae
Pathway
val03022
Basal transcription factors
val03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VDBG_05562
09124 Replication and repair
03420 Nucleotide excision repair
VDBG_05562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_05562
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_05562
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
VDBG_05562
DNA repair and recombination proteins [BR:
val03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
VDBG_05562
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
9531439
NCBI-ProteinID:
XP_003004449
UniProt:
C9SL85
LinkDB
All DBs
AA seq
384 aa
AA seq
DB search
MNQIDASDHYEVANTGETASLCTVILDVNPRAWSALSDVLPISKALSNVLIYLNANLAFS
NTNQVAVIASHTNRAVWLYPTKSEPSNTPSTDGDVAMSDAPPKKAKVPSANKFTQFAQVE
DAVLRSLKKLLDETTEADLDCTTTQLSGALTLALAHINKVNLSYTASLSSDTAKPMTTAA
PGLSSHILVVSVSDSDPSQYISTMNAVFAAAHASIPIDVLSLSPATAKQTAAAQTTDPND
PHKSASSSSFLQQASHITNGTFLEPPSPLGLLAYLTFGLAVADTRARAALVPPTHHTVDF
RAACFCHGRVIDTGFVCSVCLSIFCSVPEGADCLTCGTHLALGHYGAKPAVVPRKKKKRK
KQLLPNGSIREVSGTPVAGGTPMR
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagatcgatgcctcagaccattacgaggtggcaaacacgggagagacggcttct
ttgtgcactgtcattctcgatgtcaatcctcgagcctggagtgccctgtccgacgtcctc
cccatctccaaggctctctccaatgttctcatctacctcaacgccaaccttgccttcagc
aacaccaaccaagtcgccgtcatcgcctcccatacgaaccgcgcagtatggctctaccca
acgaagtctgaaccctcgaacacgccctcgacagacggcgatgtcgccatgagcgatgcg
ccaccgaagaaggcgaaggtcccctctgcgaataagttcacacagtttgcccaagtcgaa
gatgccgtcctgcgcagcctgaagaagctccttgacgagaccaccgaagccgacctagac
tgcacgacgacacagctttccggcgccctgaccctcgccctcgcgcacatcaacaaggtc
aacctctcctacacagcctccctctcctccgacacggccaaacccatgacaaccgccgcg
ccaggcctctcctcccacatcctcgtcgtctccgtctccgactcggatccctcacaatac
atatccaccatgaacgccgtcttcgcagcagcccacgcctccatccccatcgacgtcctt
tccctctcgccggccacggcgaaacagacggcggccgcccaaacgacggacccaaacgac
ccccacaagtccgcctcctcctcgtccttcctccagcaggcgtctcacatcacaaacggc
acctttctcgagccgccctccccgctgggtctgctcgcctacctgacctttggcctcgca
gtcgccgatacccgcgcccgcgccgctctcgtgccaccgacccaccacaccgtcgatttc
cgcgccgcctgcttctgccacggccgcgtcatcgacacgggcttcgtctgctccgtctgt
ctcagcatcttctgctccgttcccgagggcgccgactgtctgacgtgcggcacccacctc
gccctcggccactacggcgccaagcccgccgtcgtaccgcggaagaagaaaaagcggaag
aagcagctactgccgaacgggagcatcagagaggtctcggggacgcccgtggccggcggc
acacccatgcgttga
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