Verticillium alfalfae: VDBG_05820
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Entry
VDBG_05820 CDS
T02227
Name
(RefSeq) ATP-dependent RNA helicase DOB1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
val
Verticillium alfalfae
Pathway
val03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDBG_05820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_05820
03041 Spliceosome [BR:
val03041
]
VDBG_05820
03009 Ribosome biogenesis [BR:
val03009
]
VDBG_05820
03016 Transfer RNA biogenesis [BR:
val03016
]
VDBG_05820
Enzymes [BR:
val01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VDBG_05820
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
VDBG_05820
Spliceosome [BR:
val03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
VDBG_05820
Complex C
U4/U6.U5 tri-SnRNP related factors
VDBG_05820
Ribosome biogenesis [BR:
val03009
]
Eukaryotic type
Pre-60S particles
Helicases
VDBG_05820
Transfer RNA biogenesis [BR:
val03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
VDBG_05820
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Helicase_dom4_arc
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9536680
NCBI-ProteinID:
XP_003004707
UniProt:
C9SJU7
LinkDB
All DBs
AA seq
1107 aa
AA seq
DB search
MDDLFDVFEGNPRAETSELSEPEAAPTGVKPSKKSKKDKSKKRKADGIIKSQPTTTDAVD
TEMVDAEDDAKNGDESEDPQVDAEDNDGNESNKRRKKDEEPEPVLTDSFQTAESRQVAGA
QAFAPDEGDSLVLSHNIQHQVALPPDLDHEYIPLSEHKAPDEPARTWNFKLDPFQSLSVA
SIERDESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDFEAMFGDV
GLMTGDITINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTRGVVWEET
IILLPDKVRYVFLSATIPNAFQFAEWIAKIHKQACHVVYTDFRPTPLQNYFFPAGGKGIY
LVVDEKGVFKENNFQKTMQEVEQSKGQDPGDANAKWKGKGNNKKTQKGGGADPKADIVKI
VRMIMTKKFQPVIVFNFSKRECENLAVGLSSLQFNTDNEKAMVRHVFNNAIKSLSDQDRE
LPQISNLLALLERGIGVHHSGLLPILKETIEILFQESLIKVLVATETFSIGLNMPAKTVV
FTQVTKWDGVKTRPLTPSEYIQMSGRAGRRGLDSRGIVIMMIDEKMEPDTARGIVVGQQD
RLNSAFYLGYNMILNLLRIEAISPEFMLERCFHQFQNAASVPDLERGLVQLQQEKDNFVI
TDESTVKDYYNIRTQLEQFAMDMRAVIQHPSHCLDFLQPGRLVRIYNPKLQEASLDGTDF
GWGVVANFTKRRAPDSRKGEPEYPPQESIMIDVMLPISPDSDEITQGFNITTEMPKNVYP
ESTSNSPARFEIVPCLLTCLKSISQIRVFMPKDINSQASKDQVRRSLLEVTRRFPDGLPI
LDPMENMGIKDESFIKLLRKIEVLESRLLTNPLHGSPLLPELYLQYRAKVKLGEEIKEKK
KGIAKAHSISQMDELKARKRVLRRLGFLNENEVVQLKARVACELSSTEGHELILAELLFD
RFFNELAPETIAAVLSCFVLDEKLEAQPLKEELDKPFRAILAKARQVAKVSIESKMDINE
EEFVGKFKWQLMETVHAWSNEKSFADICKMTNAYEGSLIRLFRRLEELLRQMAQGAKVMG
SEELQVKFEASLNKIRRDIVAAQSLYL
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggacgacctttttgatgtcttcgagggcaatcctcgggcagagacttcagaactcagc
gagcccgaggccgcgcccacgggcgtcaaaccatccaagaaaagcaagaaggacaagagc
aagaagcgcaaggccgatggcatcataaagtctcagccaacaacaaccgacgctgttgac
accgaaatggtagacgccgaggatgatgcaaagaacggcgatgaatcggaggatccacag
gttgacgccgaggacaacgatggcaacgagagcaacaagcgccgcaagaaggatgaagaa
cctgagcccgtcttgaccgacagcttccaaacggccgagtcgcgtcaggtggctggcgca
caagcatttgcgcctgacgagggggattccttggtcctgtcccacaacatccagcatcaa
gtcgcgctacctcccgatctcgaccacgagtacatccctctctccgaacacaaagccccc
gacgagcccgccaggacatggaacttcaagcttgacccttttcaaagcctttcggttgcg
tccatcgagcgagatgagagtgttcttgtctctgcgcataccagtgccggcaagacggtc
gttgccgaatacgccattgcgcagtgcctcaagaggaaccagagagtcatctataccagt
cccattaaggccctcagcaaccaaaagtaccgggactttgaagccatgtttggcgatgtc
ggcctcatgacaggcgacatcactatcaaccccaccgccagctgtcttgtaatgacgacg
gagattttgcggtctatgctgtaccgtggctccgagatcatgcgggaggtggcttgggtt
gtctttgacgagattcactacatgcgtgataagacccgcggtgtcgtatgggaggagacc
attatcttgttgcctgacaaggtccgatatgttttcttgtcagccactattccgaatgcc
ttccagtttgccgagtggattgccaagatccacaagcaggcctgtcacgtcgtatatacg
gatttccgaccaacacccttacagaactacttttttccagccggcggcaaaggcatctac
ctcgtggttgacgaaaagggagtcttcaaggagaacaactttcaaaagacaatgcaagag
gttgagcaatccaagggccaagatcccggcgacgcgaacgccaagtggaagggaaagggc
aacaacaaaaagacgcagaagggcggcggcgccgatcccaaggccgacattgtcaagatt
gtacgcatgatcatgaccaagaagttccagcccgtcatcgtcttcaacttcagcaagcga
gagtgtgagaatcttgctgttggcctgtcgagcctgcagttcaataccgataacgaaaag
gcaatggttcgccacgtcttcaacaatgctatcaagagtttgtccgaccaggatcgtgag
cttcctcaaatttcgaatctcctggctctgctcgagcgcggcatcggcgtccatcactct
ggcctcctgcccattctcaaggagacgatcgagattctcttccaggagtccctgatcaag
gttctcgttgcaactgagacgttctcgattggtctcaacatgcctgcaaagactgttgtc
ttcacacaggtgaccaaatgggacggcgtcaagaccaggcctcttacaccatccgaatac
attcagatgtctggacgtgccggtcgtcgtggcctagactcccgtggcatcgttatcatg
atgatcgacgagaagatggagcctgacacggcccgtggcattgttgtaggtcaacaggat
cgtctcaattcggccttctacctgggttataacatgatactcaaccttctgcgcatcgaa
gccatctcacctgagtttatgcttgagcgctgcttccaccagttccagaatgccgccagc
gtaccagacctagaacgaggactcgtgcaacttcaacaggagaaggataactttgtcatc
acggatgaatcgacagtcaaggattattacaacatcagaacccaacttgagcagttcgcc
atggatatgcgggctgtcattcaacatccgtcacactgtctcgactttttacagcctggc
cgccttgtccgcatctacaaccctaagcttcaggaggctagcctcgacggaacggacttt
ggctggggtgtcgttgccaattttactaagcgccgcgctcccgatagtagaaagggcgag
cctgagtacccgccgcaagagtccatcatgattgatgttatgcttcccatctcgcctgac
agcgatgagatcacacagggcttcaacatcacgaccgagatgcccaaaaacgtttacccc
gagtcgacttcgaacagcccggcccgttttgagattgtcccttgcctcttaacctgcctg
aagagcatcagtcagatccgcgttttcatgcctaaggatatcaactcgcaagctagcaag
gatcaggttcgcagatctttactcgaggtcacacgccgttttccagatggcctgccgatc
ctcgaccccatggaaaacatgggcatcaaagatgaatccttcatcaagctcctgcgcaag
attgaggttctcgagtctcgccttctgacgaacccactccacggatcgcctcttttaccg
gagctctacctgcaatatcgcgccaaggtcaagctcggcgaagagatcaaggagaagaag
aagggcatcgctaaagcacacagtatatcacagatggacgaactcaaggctcgcaagcgt
gttctacgtcgcctcggcttcctcaatgagaacgaagttgtgcagctcaaggcccgcgtc
gcctgcgagctgtcgtctaccgaaggccatgagctcatcctagctgaacttcttttcgac
aggttcttcaacgaactggcgcctgagacgattgctgccgtgctaagctgtttcgtgctc
gatgagaaacttgaggctcagccgcttaaggaggaacttgacaagccgttccgtgctatt
cttgccaaggctaggcaggtcgccaaggtcagcatcgagagcaaaatggatatcaacgaa
gaggagtttgtcggaaaattcaagtggcaactgatggagacggtgcatgcatggtctaac
gagaagtcttttgccgatatttgcaaaatgaccaatgcttacgagggctccctcatccgt
ctgttccgccgccttgaggagctgcttcgccaaatggcccagggcgccaaggtcatgggc
tctgaggagctacaagtcaagttcgaggcgagtttgaacaagatccgccgcgacattgtt
gcagcgcagagcttgtacctgtaa
DBGET
integrated database retrieval system
