KEGG   Verticillium alfalfae: VDBG_06013
Entry
VDBG_06013        CDS       T02227                                 
Name
(RefSeq) hypothetical protein
  KO
K13174  THO complex subunit 5
Organism
val  Verticillium alfalfae
Pathway
val03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    VDBG_06013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_06013
   03041 Spliceosome [BR:val03041]
    VDBG_06013
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     VDBG_06013
Spliceosome [BR:val03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    VDBG_06013
SSDB
Motif
Pfam: FmiP_Thoc5 SPATA1_C KIF21A XRCC4_CC
Other DBs
NCBI-GeneID: 9536372
NCBI-ProteinID: XP_003003571
UniProt: C9SM89
LinkDB
AA seq 213 aa
MTSSQPQVSDLRLDAVLRTSAESREQADALVALLSTADEAGARLPADLEATLSKQQKLLF
TNIAHLRGLHRAAHFSARETKATTAEDRQAVDTLHLQLQNLYYEQRHLQGEIAACDEYDH
SHLRLPLIPVEDFLDQHPDQATDDENALMTARIAHERAQRETLEQQRQELLKRKQKLISE
NKKRKDDLANLDKDLEKFIDAAKPIQVLFEKVV
NT seq 642 nt   +upstreamnt  +downstreamnt
atgacctcctcgcaaccccaggtctccgacctccgcctcgacgccgtgctgcgcacctct
gccgaatcccgcgaacaggcggatgctctcgtcgccctcctgtccactgccgatgaagcc
ggcgcccgtctccctgccgacctcgaggccaccctgtctaagcagcagaagcttctgttc
accaacatagcccacctccgaggcctccaccgcgccgcccacttctctgcccgcgagacg
aaggcgactaccgccgaggaccgtcaggccgtcgacaccctgcacctccagctacagaac
ctttactacgagcagcgccacctacagggcgagatcgctgcctgcgacgagtacgaccac
tcgcatctgcgcctgccgctcattcctgtcgaggactttctcgatcagcatcccgaccag
gcgaccgacgacgagaacgcgctcatgacggcgcgcatcgctcacgaacgcgctcagcgt
gagaccctcgagcaacagagacaggagctcctgaagcgcaagcaaaagctcatctccgag
aacaagaagcgcaaggatgacctggcgaatctcgacaaggacctggagaaatttattgat
gccgcgaagccgattcaggtacttttcgagaaggtggtgtga

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