Verticillium alfalfae: VDBG_06706
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Entry
VDBG_06706 CDS
T02227
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 5
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
val
Verticillium alfalfae
Pathway
val03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VDBG_06706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_06706
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
VDBG_06706
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUDIX_2
Motif
Other DBs
NCBI-GeneID:
9537188
NCBI-ProteinID:
XP_003003144
UniProt:
C9SP81
LinkDB
All DBs
AA seq
268 aa
AA seq
DB search
MSTITPEALESGQSPVIPLSFNANQPSTIRLYPLSNYTFGVKETQPEEDPSVLARLKRLE
EHYTQYGMRRTCEGILVCHEHNHPHILMLQIANAFFKLPGDYLRPEDDESEGFKARLDER
LAPVGRIGEGEEKGDWQLGDCLAQWWRPNFETFMYPFIPAHVTRPKECKKLYFIQLPKSK
VLSVPKNMKLLAVPLFELYDNTARYGPQLSAIPHLLSRYNFEFVDEDGKVVAMTPGTGPP
DGYVPTTKVLAGDDTEMAEEVKEENGTS
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacaataacccccgaagcactggaatcgggccagtcgcccgtcattcccctctcc
ttcaatgcgaatcaaccaagtacgattcgactctacccactcagcaactacacctttggc
gtcaaggagacgcagccagaggaggacccgtcggtcctcgcccgcctcaagcgcctcgag
gagcattacacccaatatggcatgcgccgcacctgcgagggcatcctcgtttgccacgaa
cacaaccacccccacattctcatgttgcagattgcgaacgccttcttcaagctccccggc
gactatctgcgccccgaagacgacgagagcgaaggcttcaaagcgcgcctggacgagcgc
ctcgcccctgtcggccgcatcggcgaaggcgaggaaaagggcgactggcagctcggcgac
tgtctcgcacagtggtggcgaccgaacttcgagacgttcatgtaccccttcatcccggca
cacgtcactcggccgaaagagtgcaagaagctgtactttatccagctacccaagagcaag
gtcctcagcgttcccaagaatatgaagcttcttgccgttcctctcttcgagctttacgac
aatacggcacgctacggcccgcagctgtccgcgatcccccatctcctcagcagatacaac
tttgagttcgtcgacgaagacggcaaggtcgttgccatgactcccggcaccggtcccccg
gatggctatgtcccgacgaccaaggtgctggcaggcgacgacacagagatggcagaagag
gtgaaggaggagaacggcacaagctag
DBGET
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