Verticillium alfalfae: VDBG_06740
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Entry
VDBG_06740 CDS
T02227
Name
(RefSeq) exosome complex exonuclease RRP45
KO
K03678
exosome complex component RRP45
Organism
val
Verticillium alfalfae
Pathway
val03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDBG_06740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_06740
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
VDBG_06740
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
9537304
NCBI-ProteinID:
XP_003003178
UniProt:
C9SPB5
LinkDB
All DBs
AA seq
271 aa
AA seq
DB search
MPREAEPSVNEKEFILKALHEGVRLDGRPFDQYRTIDISFGDEYGVVDVSLGKTSSPPSS
RPWRRRTWSRASPPTRRCCCRGCSRRRSAAPAPSTWSRSASSPAPKVWSVRADVHVVSHD
GNIVDAACLAAVAALRHFRKPDAQVEGEDLTVFTPAEREPVPLGWLHSPFCVTFAHFAAK
DDSSPDHDGGDVTLLDPDWREEQLRVASCTISLNKLGEVCQVSKLGGDAVEATTLLQCAA
RRGPQGQGAVGPGRQDAGRRRQEERQGRPDG
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgagaagccgaaccctcggtcaacgaaaaggagttcatcctcaaggccctgcat
gaaggcgtcaggttagacggccgtcccttcgaccagtatcgcaccatcgacatttccttt
ggcgatgagtacggcgtcgtcgacgtgagcctcggcaagacgagctcgccaccgagctct
cgcccatggcgtcgccgcacctggagccgggcaagcccaccgacacggagatgctgctgt
cgcggctgctcgagaagacgatccgccgctccggcgccctcgacatggagtcgctctgcc
tcgtcgccggcgccaaaggtgtggagcgtccgcgccgacgtccacgtcgtctcgcacgac
ggcaacattgtcgacgccgcctgcctcgccgccgtcgccgccctgcgccactttcgcaag
cccgacgcccaggtcgagggcgaggacctcaccgtcttcacgcccgccgagcgcgagccc
gtgcccctcggctggctgcactcgcccttttgcgtcacctttgcccacttcgccgccaag
gacgacagcagccccgaccatgacggtggcgacgtgacgctgctcgaccccgactggcgc
gaggagcagctgcgcgtcgcctcgtgcaccatcagcctcaacaagctcggtgaggtgtgc
caggtgtccaagctcggcggcgacgccgtcgaggccacgacgctgctccagtgcgcggcc
cgtcgcggcccgcaaggtcaaggagctgtcggacctggtcgacaggacgctggccgccga
cgccaagaggagagacaagggcggcctgatggctga
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