Verticillium alfalfae: VDBG_06781
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Entry
VDBG_06781 CDS
T02227
Name
(RefSeq) transcription regulatory protein SNF5
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
val
Verticillium alfalfae
Pathway
val03082
ATP-dependent chromatin remodeling
val03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
VDBG_06781
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
VDBG_06781
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
val01009
]
VDBG_06781
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_06781
03036 Chromosome and associated proteins [BR:
val03036
]
VDBG_06781
Protein phosphatases and associated proteins [BR:
val01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
VDBG_06781
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
VDBG_06781
SWI/SNF complex
VDBG_06781
Chromosome and associated proteins [BR:
val03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
VDBG_06781
PBAF complex
VDBG_06781
SWI/SNF complex
VDBG_06781
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
INO80_Ies4
Motif
Other DBs
NCBI-GeneID:
9537345
NCBI-ProteinID:
XP_003003219
UniProt:
C9SPF6
LinkDB
All DBs
AA seq
724 aa
AA seq
DB search
MAAQPSTSTSASTPTPSATPVGATASSSSAAASANGNDDASQADAQAKPAPAVLVRDKES
FQKLMVERYVTRDWENQAAQGIAMRYNADSFQRYNDKIAEYKIIRESHRQYFPPARLYGE
GYAGWGNGHTEIDPRVKTAFPTQILYPAFKPRLGKRRSPPLTWKKKDIKKQAEQHEELVP
VRIDVDTDKLKLRDTFTWNLHDRIVHLDTFAQTLIEDIGLEMGPANKHVHDAIVHQMHDQ
LMDFYPFAFSEEDALDPELPYSAYKNDEMRILIKLNITIGQHTLVDQFEWEINNPLNSPE
EFAATMARDLSLSGEFTTAIAHCIREQTQLFTRSLYGVGHPFDGRPVEDPDLINAFLPSP
LPAVFRPQQQAKEYAPYLYELNDIDIERNELVFSREQRRQKRSINRRGGPQLPDLKDRQR
TIRTLIVSSVLPGAAASLDETTLYKRVAGAPGTRKRPGARDGDLSESDSSDDSGPDSPAI
SQLGGGTARTRGLRGAATAAQQRMANLGRSETPEASVIHHHETRRNAGRYGRDLRDDTEE
PTTMIITLKINKDKLRRFLQNPKARITPSGSQTPGTPSINRAPSSMPPPSTPASNNQMLP
KAGTPAAPQALLGGVSAPNPVEGQPPPPPPPPPEWLSRGLQELRETYPHDQFEGIMRHSC
INPETELPVVIPAGQPTPPGHRWMFLPRIRCTDCPGKSYTPGPDMTTGNFERHLGAGQPS
QERG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggccgcgcaaccatcaacatccacgtcggcgtcgacacccacaccctcggccacacct
gtcggcgcgacagcctcttcctcatcagcagccgcctcagccaacggcaacgatgacgcg
tctcaagctgatgcccaggccaagcccgcgcctgccgttctcgtgcgcgacaaggaatcc
ttccagaaactcatggtcgaacgctatgtgacgcgcgactgggaaaaccaggccgcccag
ggcatcgccatgcggtacaacgccgacagcttccagcgctacaacgacaaaatcgctgag
tacaagattatacgcgagtcccaccgccagtattttccgcccgcccggctctatggcgag
ggctacgccggttggggcaacggccacacagagatcgacccacgggtcaagacggcgttc
ccaacccaaattctctacccagctttcaagccgcgacttggaaagaggcgatcgccgccg
ttgacgtggaagaaaaaggacatcaagaagcaggcggagcagcacgaagagctggtgcct
gtgcgcatcgacgtcgatacggacaagctgaagctgcgcgatactttcacgtggaacctc
cacgaccggatcgtgcacctggacacatttgcgcagacgctcatcgaagatataggtttg
gagatgggcccggcgaataagcacgtccacgacgccattgtgcaccagatgcacgaccag
ctgatggacttttacccctttgccttttccgaagaggatgccctcgatcccgagctcccc
tactcagcgtacaagaacgacgagatgaggatactgatcaagctgaacatcacgatcggt
cagcataccttggtcgaccagttcgagtgggagatcaacaaccctctgaactcgcctgaa
gagtttgccgccacgatggctcgcgatctgtccctctccggcgaattcacgaccgccatc
gcgcactgcattcgagagcaaacccagctcttcacgcgcagcctttacggcgtcggccat
ccctttgatgggcgccctgtggaagatcccgacctcatcaacgctttcctgccatcgcca
ctacccgccgtcttccgaccacagcaacaagcaaaggagtacgcgccatacctctatgag
ctgaacgacattgatatagaacgcaacgagcttgtcttctccagagagcagaggcgacag
aagaggtccatcaacaggcgaggcggacctcagctccccgatctcaaggaccgtcaacga
acaatccgcacgctcatcgtctcgtctgtgttacccggcgctgctgctagcctcgacgag
acaacgctgtacaagagggtcgcaggagcccccggcacacgcaagaggccaggcgcccgc
gatggcgatctctccgaatccgactcgagcgacgactcaggacccgactcgcccgccatc
tcacagcttggcggcggcacggcgaggacgaggggcctacgcggggccgcaacagccgcc
cagcaacgcatggcgaacctggggcgctccgagacccctgaggcgagcgtcatccaccat
cacgagacgcgcaggaatgccggccgctacggccgtgatctgcgcgacgacacggaggag
ccaacgaccatgatcatcacgctcaaaatcaacaaggataagctcaggagattcctgcag
aacccgaaagcacgaatcaccccaagcgggtcgcaaacgccaggaacgccgagcatcaac
agggcaccgagctccatgccgccaccttcgaccccggcttccaacaaccagatgttgccc
aaggctggcacgccggctgctccgcaagcgctgctcggcggcgtgtctgcaccgaacccg
gtcgaggggcaaccccctccgccaccgccgcccccgcccgaatggctctcccgaggcctc
caggaactccgcgagacgtatccccacgaccagttcgaaggcatcatgcgccactcctgc
atcaaccctgagaccgaattgcccgtggtcatccccgctggccagccgacacctcccggg
caccgctggatgttcctcccgcgtatccgctgcacggactgtcctggcaagtcgtacacg
ccggggccggacatgacgacgggcaactttgagcggcacctgggggctgggcaaccatcg
caagaacgtggataa
DBGET
integrated database retrieval system
