KEGG   Verticillium alfalfae: VDBG_07004
Entry
VDBG_07004        CDS       T02227                                 
Name
(RefSeq) nucleolysin TIA-1
  KO
K13201  nucleolysin TIA-1/TIAR
Organism
val  Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:val00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_07004
   03041 Spliceosome [BR:val03041]
    VDBG_07004
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     VDBG_07004
Spliceosome [BR:val03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    VDBG_07004
SSDB
Motif
Pfam: RRM_1 RRM_occluded RRM_5 RRM_7 Cas_Cas2CT1978 RRM_8
Other DBs
NCBI-GeneID: 9527427
NCBI-ProteinID: XP_003002433
UniProt: C9SR92
LinkDB
AA seq 443 aa
MARKPPPPLHIPQNNNPIPTAITSPLSGVDQALSPGSAGGFGRRAAPEPNKRALYIGGLD
QRVTEDVLRQIFETTGHVQNVKIIPDKNQKGYNYGFVEYDDPGAAARAMQTLNGRRVHEI
RVNWAYQSNTTSKEDTSNHFHIFVGDLSNEVNDEILSQAFAAFGSVSEARVMWDMKTGRS
RGYGFVAFRDRPDAEKALSSMDGEWLGSRAIRCNWANQKGQPSIAQQQAMQAMGMTPTTP
FGHHQFPAHGMASYEVILAQTPNWQTTVYVGNLTPYTTPNDVVPLFQNFGFVVESRFQAD
RGFAFIKMESHEAAAMAICQMNGYNVNGRPLKCSWGKDKTPNAAGGFDPAQQGYSPQSAT
APGAYPGTPTAYFPQYGAQYSGQPGNYGGPTAQSPAGYGAQPMAYGGPQSAGGYGRGQQA
PSGQWQQGPQGQAFNNGYGGYQG
NT seq 1332 nt   +upstreamnt  +downstreamnt
atggccagaaagcctccccctcccctgcacatcccgcagaacaacaaccccattccgaca
gccatcacctcgcctctgtctggcgttgaccaggctctttcgccgggcagcgctggaggc
tttggccgccgtgctgctccggagcccaacaagcgtgccctctacatcgggggcctcgac
cagcgcgtaacggaagatgtcctgcggcagatattcgagacgactggccacgtccagaac
gtcaagatcatccccgacaagaaccaaaagggttacaactacggattcgttgagtacgac
gatcctggtgcggccgcccgcgctatgcaaaccttgaatggacgtcgtgttcacgaaatc
cgcgttaactgggcttaccagtccaacacaacgagcaaggaggacacctcgaaccacttc
cacatcttcgtgggcgacttgtcgaacgaggtcaacgacgagatcctttctcaagccttt
gctgccttcggatccgtctctgaggctcgtgtcatgtgggatatgaaaactggccgatcc
cggggttacggatttgtcgccttccgggaccgacctgatgcggagaaggctctgagctcc
atggatggcgaatggctgggttcccgcgctatccgctgcaactgggcgaaccagaagggc
cagccctcgattgcccagcagcaggccatgcaggccatgggcatgaccccgacgaccccc
ttcggtcaccaccagttccccgcgcatgggatggcctcctacgaggtcattctggctcag
accccgaactggcagacgaccgtctacgttggcaacctcactccttacactacccctaac
gacgttgtaccgctcttccaaaacttcggcttcgttgtcgagtctcgtttccaagcagac
cgtggatttgccttcatcaagatggagagccacgaggctgccgctatggccatttgccag
atgaacggctacaacgtcaatggccggcccctgaaatgcagctggggcaaggataagaca
cccaacgctgcgggtggcttcgaccctgctcagcagggctacagcccgcagagcgccact
gctcctggtgcctaccccggaacgcccactgcgtacttcccgcaatacggtgcgcaatac
agcggccagcctggtaactacggaggaccgactgctcagtcaccggccggctacggagct
caacccatggcatacggtggaccccagagtgcaggtggctacggccgtgggcagcaagcc
cccagcggccagtggcagcaaggacctcagggtcaggctttcaacaacggctacggcggt
taccaaggttaa

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