KEGG   Verticillium alfalfae: VDBG_07160
Entry
VDBG_07160        CDS       T02227                                 
Name
(RefSeq) hypothetical protein
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
val  Verticillium alfalfae
Pathway
val03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VDBG_07160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:val03019]
    VDBG_07160
Messenger RNA biogenesis [BR:val03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     VDBG_07160
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     VDBG_07160
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 9527586
NCBI-ProteinID: XP_003002589
UniProt: C9SQC5
LinkDB
AA seq 221 aa
MEHLSIEDPSHQGQPVLGGGVPPPQQQQQQQQQLPPQMFTTAAQLLDLTDKKLMVALRDG
RKLIGVLRSWDQFGMPLPPLPPSKSSHSRTLHAMKPRRHPSSARGRTLTDHATQQPRSPD
TVERVFAPAPVAAAQRCHATTPSPDQQPRGGLYADIKRGVFLVRGENVLLLGEIDLDKDD
DPPPGYELGEPEVVHRLAEGRKDADKGKEKARLRKLARSGV
NT seq 666 nt   +upstreamnt  +downstreamnt
atggagcacctctccatagaagacccctcccaccagggccagccggtcctgggcggcggc
gtccctcccccgcaacagcagcagcagcagcagcagcagctgccgccgcaaatgttcacg
acggccgcccagctcctcgacctcaccgacaaaaagctcatggtcgctctgcgcgacggc
cgcaagctcatcggtgttctacgcagctgggaccaattcggtatgcctctcccccctctc
cccccttccaagtcttcgcattcccgcactttgcacgccatgaagccgaggagacacccc
tcgtctgccagaggacggaccctgacagaccacgcaacgcagcaacctcgttctccagac
acagtcgagcgcgtcttcgcccccgcacccgtcgccgccgcgcagcggtgccacgcgacg
acgccgtcaccagaccagcagccgcgcggcggcctctacgccgacatcaagcgcggcgtc
ttcctcgtgcgcggcgagaacgtgctgctcctcggcgagattgacctcgacaaggacgac
gacccgccgccgggctacgagctcggcgagcccgaggtcgtgcaccgcctcgccgagggg
cgcaaggacgccgacaagggcaaggagaaggcgaggctgcgcaagctggcgcggagcggg
gtttga

DBGET integrated database retrieval system