Verticillium alfalfae: VDBG_07160
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Entry
VDBG_07160 CDS
T02227
Name
(RefSeq) hypothetical protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
val
Verticillium alfalfae
Pathway
val03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDBG_07160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_07160
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VDBG_07160
mRNA degradation factors
5'-3' decay
Lsm complex
VDBG_07160
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
9527586
NCBI-ProteinID:
XP_003002589
UniProt:
C9SQC5
LinkDB
All DBs
AA seq
221 aa
AA seq
DB search
MEHLSIEDPSHQGQPVLGGGVPPPQQQQQQQQQLPPQMFTTAAQLLDLTDKKLMVALRDG
RKLIGVLRSWDQFGMPLPPLPPSKSSHSRTLHAMKPRRHPSSARGRTLTDHATQQPRSPD
TVERVFAPAPVAAAQRCHATTPSPDQQPRGGLYADIKRGVFLVRGENVLLLGEIDLDKDD
DPPPGYELGEPEVVHRLAEGRKDADKGKEKARLRKLARSGV
NT seq
666 nt
NT seq
+upstream
nt +downstream
nt
atggagcacctctccatagaagacccctcccaccagggccagccggtcctgggcggcggc
gtccctcccccgcaacagcagcagcagcagcagcagcagctgccgccgcaaatgttcacg
acggccgcccagctcctcgacctcaccgacaaaaagctcatggtcgctctgcgcgacggc
cgcaagctcatcggtgttctacgcagctgggaccaattcggtatgcctctcccccctctc
cccccttccaagtcttcgcattcccgcactttgcacgccatgaagccgaggagacacccc
tcgtctgccagaggacggaccctgacagaccacgcaacgcagcaacctcgttctccagac
acagtcgagcgcgtcttcgcccccgcacccgtcgccgccgcgcagcggtgccacgcgacg
acgccgtcaccagaccagcagccgcgcggcggcctctacgccgacatcaagcgcggcgtc
ttcctcgtgcgcggcgagaacgtgctgctcctcggcgagattgacctcgacaaggacgac
gacccgccgccgggctacgagctcggcgagcccgaggtcgtgcaccgcctcgccgagggg
cgcaaggacgccgacaagggcaaggagaaggcgaggctgcgcaagctggcgcggagcggg
gtttga
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integrated database retrieval system