Verticillium alfalfae: VDBG_08063
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Entry
VDBG_08063 CDS
T02227
Name
(RefSeq) ATP-dependent DNA helicase srs2
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
val
Verticillium alfalfae
Pathway
val03420
Nucleotide excision repair
val03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VDBG_08063
03430 Mismatch repair
VDBG_08063
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
val03400
]
VDBG_08063
Enzymes [BR:
val01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VDBG_08063
DNA repair and recombination proteins [BR:
val03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VDBG_08063
MMR (mismatch excision repair)
Other MMR factors
VDBG_08063
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
AAA_11
DUF1631
Motif
Other DBs
NCBI-GeneID:
9529944
NCBI-ProteinID:
XP_003001804
UniProt:
C9ST38
LinkDB
All DBs
AA seq
999 aa
AA seq
DB search
MSLSSAAPSAAESLLASLNKAQCRAVTSSAPTVAILAGPGSGKTHTLTSRVVWLLENAGY
HPADIVVATFTVKSAREMKERIGRALGDGREKKIVLGTFHSIARRYLATYGQRIGLSQRF
GIADDGDSRAVIQRICKRLGLVVDPHAVRSWISKKKAKGSEQHIPQRPNAKKPRENPEFE
TCFRAYQDHLERSNLLDYDDLLTKCVELLRKHPSCVSNVQAVLIDEYQDTNGIQYELMRL
FAQARDRITIVGDPDQSIYGWRSAEIKNLYRLLKDFPQTDEISLEENYRSSQAILDVSLK
VIQQDKKRYQKLLLPVHNKGTRPVLRRLKTAANEAEWLVSEIRRAILMSGKMMNEDDVAI
LLRSAALSRHIESALGKCGIPYRMVGGKKFYERIEVKILIDYLRVIHQPENNDSLARIIN
VPRRGIGDVTIKSLVEEAETAKMDVWTLLTKHCRGDRKAQTNIKKAMEQKISGELIRMVM
SVRKKVEEPPSGSPCYHLVDLIGDLLSQLNFQKYLQDMYPEEHEARWANVEEFINLAGDF
MRELSATVEDDKLPTIDGVQQVEEKDALGRFLANVALASDSQKGETENKPMVTISTIHAA
KGLEWPVVFVPAVYNGSIPHARAEDLDEERRLLYVAMTRAQSLLYLSCPLYSSQAGGMGG
GGEKAELSTFLPTEIHQSFARRGPSFSTEVIQEVGRILGRADSVPSAERIFAQMPLLERL
EDTLYPADPEESNPAGRADKSGFKRHRGPQANGDTPAEAYPQWQTATTMEAASGFTLPGF
TTAGAHQTAIAAAKEVAQAAEAAGPQRKQAGPGHANTRRAGTTKRPPDQRSLLGFVNKRQ
KSDPSGTASEPTPVADVRSGLTRHVSTSHSAVAPYPRGQQAPPHPAAPALPGHRLTTPTI
AKPTAKSRPPAGEAQAHYGFLSSSPAKSAVPQPGDDDAEAEPVVAPEARERPASCLHATT
SMGQGVGRFERPALLKKEGGIAPIDRLRKPFKPLTMNRR
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgagcttgtccagcgcagcgcctagtgcggctgagtcccttctcgccagtctcaacaag
gcacaatgtcgcgccgtcacctcctcagcacccaccgtcgccatcctggctggaccaggt
agcggcaagacgcataccttgacctctcgtgtcgtttggctcctggagaatgccggctac
cacccggcagacatagtcgtcgcgactttcaccgtcaagtcggctcgagaaatgaaagag
cgcatcggacgggcattgggcgacggccgtgagaagaagattgtcctcggcacctttcac
agcattgcccgccgctatcttgctacctatggccaacgcatcggcctcagtcagaggttt
ggcatcgctgatgacggagattcgagagccgtcatccagaggatatgcaagcggctgggt
ctggtggtggatccccatgccgtccgttcctggatcagcaagaagaaggccaagggctcg
gagcagcacatcccacagcggcccaacgccaagaagccgcgcgagaaccccgagttcgag
acctgcttccgcgcgtaccaggaccatctggagcgctccaacctcctcgactacgacgac
ctgctgaccaagtgtgtggagctgctgcgaaagcacccctcatgcgtgtccaacgtgcag
gcggtgctcattgacgagtaccaggacacaaacggcatccagtacgagcttatgaggcta
tttgcccaggcccgcgatcgcatcactatcgttggtgacccggaccagagcatttacggc
tggcgatcggccgagatcaagaatctgtatcgtctgttgaaggactttccccagacggac
gaaatctcactggaggagaattatcggtcgtcacaggccatcctggacgtgtcgttaaag
gtcattcagcaagacaagaagcggtaccaaaaactcctgcttcccgtccacaacaagggc
acgcggccggtgttgcgccgactgaagacggccgccaacgaggcagagtggctcgtctcc
gagatccgacgtgccattctcatgtcggggaaaatgatgaacgaagacgatgtggccatc
ctgctgcggtctgcagcactctcccgacacattgagtcagcgctcggcaagtgcggcata
ccttacaggatggtgggcgggaaaaagttttacgaacgcatcgaggtcaagattctcatt
gattatctacgtgtcattcaccagcccgagaacaacgactcgcttgcgcgcatcatcaat
gtccctcgtcgcggtatcggcgacgtgaccataaagagtctcgtcgaagaggctgaaact
gccaagatggacgtctggactcttctgacgaagcactgccgcggggaccgaaaggcgcaa
acaaacatcaagaaggcgatggagcaaaagatcagcggggagctcatcagaatggtcatg
tcggtgaggaagaaggtcgaggaacccccgagtggaagtccctgctaccatctggtcgac
ctcattggcgatctgctctcgcagctgaatttccagaagtacctccaggacatgtatccc
gaggaacatgaggcgcgatgggccaacgtcgaggagtttataaacctagcgggcgatttc
atgcgcgagctcagcgcgactgtggaagacgacaagttgcccaccatcgacggcgtccag
caggtggaggagaaggatgcgcttggcaggtttctagccaacgtcgcgctagcttctgat
tcccagaagggtgagacggagaataagccaatggtgaccatttcaacaatccacgctgcc
aagggcctcgagtggcccgtagtcttcgtgccagccgtgtacaacggctcaataccgcac
gccagggcagaagacttggacgaggaacgaaggctcctttacgtcgccatgacgagagcg
cagtcgctcctttacctcagctgtccactctacagctcccaggccgggggtatgggtggc
ggaggagagaaggccgagctttctacgtttctgcccactgaaatccaccagtcgttcgcc
aggagagggccctcgttcagcaccgaggtgatccaggaggtgggccgcatcctaggccgc
gcagactccgtaccttcggcggaacgtatttttgcacagatgccgctgctcgagagactg
gaggacacgctttaccctgccgacccagaagagagcaacccagcgggcagggctgataag
agcggtttcaagcgccaccgaggcccgcaggccaacggcgacactcccgccgaggcctat
ccccaatggcagacggcaaccaccatggaagccgcctcgggcttcacactgcccggtttc
acgaccgctggcgcgcaccagaccgccattgccgcggccaaggaagtcgcccaagccgcc
gaggccgccgggccgcagcgaaagcaggccggaccaggacacgccaacacgcgacgcgct
ggaacgacgaaacgtccccccgaccagcgcagcctcctgggcttcgtcaacaagagacaa
aagtccgacccatcaggcactgcctctgagcctacgcccgtcgccgacgttcgctcgggc
ctgacccggcacgtctcaacatcacactcggcggtcgcgccctatccccgcggccagcag
gcgcctccgcatccggccgcaccggctctacccggacacaggctcacgacgccgaccatc
gcgaagccgacggccaaatcacgtccgccagcaggcgaggcgcaggcgcactacggcttc
ctctcgagctcgccggccaagtcagcagtgcctcagccgggcgatgacgacgctgaagca
gagccagtcgtggcgcctgaggcgcgggagcggccagcaagctgtctgcatgcgacgaca
tcaatggggcaaggggtgggacggttcgagaggccggcgttactgaagaaggagggcggt
attgcgccgatagaccggttgaggaaaccgttcaagccactgaccatgaatcggcgttag
DBGET
integrated database retrieval system
