Verticillium alfalfae: VDBG_08247
Help
Entry
VDBG_08247 CDS
T02227
Name
(RefSeq) U3 small nucleolar RNA-associated protein
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
val
Verticillium alfalfae
Pathway
val03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
VDBG_08247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
val03009
]
VDBG_08247
Ribosome biogenesis [BR:
val03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
VDBG_08247
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40
Beta-prop_EML_2
Beta-prop_WDR75_1st
WDR55
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_Nup120_160
Beta-prop_CAF1B_HIR1
Motif
Other DBs
NCBI-GeneID:
9529248
NCBI-ProteinID:
XP_003001202
UniProt:
C9SUM7
LinkDB
All DBs
AA seq
979 aa
AA seq
DB search
MPPLQNRRHAFLRPSEYAFKLLSLCARHPNTLQTVGLVSPTNVPFTSIPLGKTTYQVTTS
VGRALQTYDLKRGLNLVFVTRPQTPADITATCAWKEKVFAAWGDRSRGEDQGLWSFHRGR
RSEELELPADLDEPIKQILIFGSWMVGCATTRLEIWKTSTLEHYTTLHTLATKKGDNEIT
GGVTNMPTYLNKIFVGRKDGWVEIWNVSTGKLIYTILPPSPDCGSVTCLQPSPALSLLAI
AYSKGPLVVHNILPDKSIIQVNAGNEYEPVNAISFRTDGMGAGHDGRKDGVMATATAATG
DVTFWDLNHGGRVMGVLRSAHNPPVEEGAKVRGGVSKIEFLSGQPVIVTSGMDNSLKTWM
FDESPFSPIPRILHQRSGHAAPVKCLQFLPTDFDGAEAGNKWLLSGGQDRSLWGWSLRRD
GQSTELSQGNIRKQAKKHGILSTRALAHGPTTSLEDLKAPEITCIASSLNRDGGIGAIPG
KQPIWQKRRDNKAQRLDAEISGMTGWESVVTAHVDDSFARTWFWGRKKAGRWAFPTGDGA
HVSTVAISPCGTFALVGSVEGGIDMYNLQSGIHRQRFPAKLTPAQAREIRIQQLKAGDDS
IQVAGGGFLQGTGRHTKAVTGIIVDSMNKHIVSCSLDGKIKFWDFLTGRLLQQIDWAPMV
GITGGRYHAGNDLLVFACDDLSIRVVDLETKKTIREFWGFWDLPTSHLIDAIRLEKASPP
ALSTNFREGGGTTTYADASGEGSKGLVEAAFDDEAEPEEDDPTVAPAIDQLSSDMMTLSL
VPKSRWQTLLHLDLIKQRNKPTEAPKVPEKAPFFLPSTSGGKPVPALEGAADTAPESTSR
ITKHELGRVQEIFTSRLMDGAVSGDYVDFIEHLKSLSPSTADLELRSLSIGDMSGNETNG
LVHFIKALTSRLKSRRDYELTQAWMTVFLRLHFDVVMENEASLAALQEWKAMQESECARL
DGLVGYCSGVVGFLRSPRT
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgccgccacttcagaacaggcgtcacgcatttttgcgcccttcagagtatgctttcaag
ctcctttcgctttgcgcacggcaccctaacacattgcagacagtcggcctggtctctcct
accaatgtcccattcacctccatacccctcggaaagaccacctatcaagtgaccacctct
gttggccgagcattgcagacttacgacttgaagaggggccttaatctcgtcttcgtcacc
cgccctcagacccccgccgacatcaccgccacatgtgcctggaaggaaaaggtttttgcc
gcctggggcgatcgaagccgaggagaagaccaagggctgtggtctttccatcgcggtcga
aggtccgaagaactggagcttcccgctgatctcgacgaacccatcaagcagatcttgatc
tttggctcctggatggtcggatgcgcgaccacgaggcttgaaatctggaagacctcaacc
ttggagcactacacgacgcttcacaccctagccaccaagaagggcgataacgagatcacc
ggaggtgtcaccaacatgcctacgtacctcaacaaaatctttgtaggccgcaaggatggc
tgggtggagatatggaacgtgagcactggcaagctcatctatactatccttccaccctca
cccgattgtggctcggtcacttgcttgcaaccttctccggcgctgtctcttctcgccatt
gcttattcgaagggcccgctagtcgtccacaatatccttcccgacaagtcgatcattcaa
gtcaatgccggcaacgagtatgaacccgttaatgcaatctcgttccgcaccgacggcatg
ggcgcaggccacgatggacgcaaagacggtgtcatggcaaccgccactgctgccactgga
gatgtcaccttctgggatctgaaccacggtggcagagtcatgggtgtgctgcgtagcgcc
cacaaccctccggtcgaggaaggagccaaggtccgtggcggcgtgagcaagattgaattt
ttgtccggccaacccgtcattgtgacgagcggaatggacaactcgctcaaaacctggatg
tttgacgagtcccccttctctccgatccctcgaatccttcaccagcgaagtggtcatgcg
gcgcccgtcaagtgcctgcagttcctgcctactgactttgacggcgcggaagccggcaac
aagtggctgctcagtggtggccaggatcgaagcctgtggggttggagtctgcgacgcgac
ggtcagagtacggaactgagccaaggcaacattcgcaagcaagctaagaagcacggcatt
ctttcaacgcgcgccttggcccatggccctactacgagcctagaggacctcaaggcgccg
gaaattacttgcattgcaagctcgctcaaccgcgacggtggcattggagccattcccggt
aagcagcctatttggcagaagcgcagagacaacaaggcacaaaggctcgacgccgagatc
agtggcatgacgggctgggagagtgttgttacggctcacgttgacgattcgttcgcccgc
acttggttctggggtcgaaagaaggctggccgctgggcgttccctacgggcgatggtgct
catgtctcaacggtcgccatcagcccctgtggcacatttgctctggtcggttccgtcgag
ggtggcattgacatgtacaaccttcagtccggcatccaccgacaacgctttcctgcaaaa
cttactcccgcacaggcgcgagagatcaggatccagcagctcaaagcaggcgacgactcg
atccaggttgccggcggcggctttttgcagggaacaggtcgccataccaaggctgtcacc
ggcatcattgttgattccatgaacaagcacattgtctcctgttccctggatggcaagatc
aagttctgggactttttgacgggcaggctgcttcagcaaatcgattgggcaccaatggtc
ggcataaccggaggacgttaccacgcgggtaatgatttacttgtgttcgcctgtgatgac
ctttccatccgagttgtggatctcgagaccaagaaaacaatccgcgagttctggggtttc
tgggatctccccacgagccatttgattgacgccattcgcctcgaaaaggcttcaccgccc
gcattgtcaacaaatttccgagaaggaggtggcacaacgacttatgccgacgcgtcaggc
gaaggcagcaaaggccttgtcgaggcagcatttgatgacgaggccgagcccgaagaagac
gatcctaccgtggcaccggcgatcgatcaactcagttccgacatgatgaccttgagcttg
gtgccgaagagccgctggcagacattgctccacctcgacctcatcaagcaacgtaacaaa
cccactgaggctcccaaggtgccggagaaggcgcctttcttccttccttccaccagcggc
ggcaagccggtgcctgccctcgagggtgcggcagacacggcacccgaatccacgtcccgg
atcacgaagcacgagcttggacgcgtgcaggagatctttaccagtaggctgatggatggc
gccgtctccggagactatgttgacttcatcgaacacctgaaatcgttatctccttcaacg
gcagacctcgagctccgctccctgtcaattggtgacatgagcggcaacgaaacgaacggc
ttggtacacttcatcaaggctttgacaagccgtctcaagtctcgtcgggactatgagctg
acgcaggcatggatgactgtattcctgagactgcactttgacgttgtcatggagaacgag
gcatcgctggcggcgctgcaagagtggaaggccatgcaggaaagcgagtgcgctcgcttg
gatgggctggttggatactgcagtggtgtcgtgggtttcctgaggagtccgaggacatag
DBGET
integrated database retrieval system
