Verticillium alfalfae: VDBG_08248
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Entry
VDBG_08248 CDS
T02227
Name
(RefSeq) rhamnogalacturonate lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
val
Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:
val00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
VDBG_08248
Enzymes [BR:
val01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
VDBG_08248
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Paralog
GFIT
Motif
Pfam:
fn3_3
CBM-like
RhgB_N
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
9529249
NCBI-ProteinID:
XP_003001203
UniProt:
C9SUM8
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All DBs
AA seq
643 aa
AA seq
DB search
MAGMAQMVAAVLQTTETSNSYIIANDRLNATVTKTGDLLGPATGSIGRGPYLDCYCTPAG
FWTPGRDRPTLALYSGEDATGTKYGGFKMSDTFPATGQVLEQYIFLREGETGLHMFSRVA
YHNETTPFLRNLQELRTLFRPNTEMWTHLLTNPEQYGPLPSKEGVAKQVVVQDATWDLSA
TPNDPYVKDFSEYFTKYTFQSTWENHKAHGMFADGSKTADGSTFGAWMVMNTRDTLFGGP
LFSDLTVDGIVYNYISSNHHGNQTPNITSGFDRTFGPYYYHFNKGPAGTDIKELHADAAQ
YADPEWNSEFYDAIAPLVPNYVTTKGRTTWKLHVDLPKGAKKPIAVLSQNGVYFQDNVFD
TKAYQYWTEVSESGDATIPMVKAGTYRLTIYAEGIFGQYIKDDVKVEVGGRIRTTHARWR
EENAGTEIFRIGTPDRSSGEYRHGFEKDLSKPRQPAEHLIYWAAYDFPSEFPDGVRYKVG
ESDPAKDLNYVHWSVFGGRGNSVRKDMYLGDGNVNNWTIVFDLEEAQVRRKREATFTVQL
AGAKTAAGNTDVFNASEPHANLAYTVNVNGQDLKPWVIPSSCAVRSAVVCYQVGNKFSFH
PSMLKAGENEIVLSLPYGATNYEPAILTQALYVQYDALRLEIR
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atggctggcatggcccagatggttgccgctgtccttcaaacgacagagacatctaactcg
tacatcatcgccaacgaccgtctcaatgccacggtcaccaagactggcgacctcctgggt
cccgccaccggcagcatcggtcgaggcccctacctcgactgttactgcacacccgcgggt
ttctggacccctggtcgtgatcgaccaacgctggccctctactctggcgaggatgccacc
ggaaccaagtacggcggcttcaagatgtccgacaccttccccgccaccggccaggtcctc
gagcaatacatcttcctgcgcgagggtgagaccggtcttcacatgttcagccgcgtcgcc
taccacaacgagacgacgcccttcctgcgcaacctgcaggagcttcgcactctgttccgc
cccaacacggagatgtggactcatcttctgacgaaccctgaacaatacggccccctgccc
agcaaggagggtgtcgccaagcaggttgtcgttcaggacgctacctgggacctcagcgcg
actcccaacgacccttacgtcaaggacttctccgaatacttcacaaagtacaccttccag
tccacctgggaaaaccacaaggcccacggcatgttcgccgatggcagcaagaccgctgac
ggctctacctttggtgcctggatggtcatgaacaccagggacaccctgttcggcggccct
ctcttctccgacctcactgtggacggtattgtctacaactacatctcctccaaccaccac
ggcaaccagactcccaacatcacctctggcttcgaccgcacctttggcccttactactac
cacttcaacaagggacctgccggcaccgacatcaaggagctccacgccgatgctgcccag
tatgccgatcccgagtggaactctgagttctacgacgccatcgccccactcgtccccaac
tatgtgacaaccaagggccgcacgacttggaagttgcacgttgaccttcccaagggcgcc
aagaagcccatcgctgtcctctcgcagaatggcgtgtacttccaggataacgttttcgac
accaaggcttaccagtactggactgaggttagtgagtcgggcgatgccaccattcccatg
gtcaaggccggaacctaccgtctcaccatttacgccgagggcatcttcggtcaatacatc
aaggacgacgtcaaggttgaggtcggtggccgcatccgaaccacccacgcacgctggcgc
gaggagaacgccggcactgagatcttccgtatcggtacccctgacaggagctctggcgag
taccgccacggcttcgagaaggacctgtccaagccgaggcagcctgctgagcacctcatc
tactgggccgcttacgacttcccctccgagttccccgatggtgtcaggtacaaggttggc
gagagcgaccccgccaaggacctcaactacgtccactggagcgttttcggaggccgtggc
aactcggttcgcaaggacatgtacctgggagacggcaacgtgaacaactggaccattgtc
ttcgatctcgaggaggcgcaggtcaggcgcaagagggaggccaccttcaccgtgcagctc
gccggcgccaagaccgctgcgggtaacaccgatgtcttcaacgccagcgaacctcacgcc
aacctggcttacactgtcaacgtgaacggccaggacctgaagccctgggtcatccccagc
tcttgcgctgtccgctccgccgtcgtctgctaccaggttggcaacaagttcagcttccac
cctagcatgctcaaggctggcgagaacgagatcgtcctcagcttgccctacggcgccacc
aactacgagcccgctatcctgacgcaggctctctacgtgcagtacgacgcgctgcgcctg
gagattcggtag
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