KEGG   Verticillium alfalfae: VDBG_08292
Entry
VDBG_08292        CDS       T02227                                 
Name
(RefSeq) replication factor-A protein
  KO
K10739  replication factor A2
Organism
val  Verticillium alfalfae
Pathway
val03030  DNA replication
val03420  Nucleotide excision repair
val03430  Mismatch repair
val03440  Homologous recombination
val03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:val00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    VDBG_08292
   03420 Nucleotide excision repair
    VDBG_08292
   03430 Mismatch repair
    VDBG_08292
   03440 Homologous recombination
    VDBG_08292
   03460 Fanconi anemia pathway
    VDBG_08292
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:val03032]
    VDBG_08292
   03400 DNA repair and recombination proteins [BR:val03400]
    VDBG_08292
DNA replication proteins [BR:val03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    VDBG_08292
DNA repair and recombination proteins [BR:val03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     VDBG_08292
   MMR (mismatch excision repair)
     VDBG_08292
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     VDBG_08292
SSDB
Motif
Pfam: RPA_C
Other DBs
NCBI-GeneID: 9529294
NCBI-ProteinID: XP_003001247
UniProt: C9STM1
LinkDB
AA seq 181 aa
MDGVAGGPGSGSGVDLDAYVRVWGRIKSFNGKRHVGAHFLRAVTDFNEVNYHLLESTYVH
LFFTKGPLGGAKAEDNGDGMFVDGGGHGNNTSNNNNASHATGQSSKVAQCTPMGQKMYNF
LVNAPGGNEGVHMNVIASGAGMSMRDVLGAADDLLGQGLVYTTIDDETWGHSRVFERVAV
G
NT seq 546 nt   +upstreamnt  +downstreamnt
atggacggcgtcgccggcggccccggctccggctccggcgtcgacctcgacgcctacgtc
cgcgtctgggggcgtatcaagtccttcaacggcaagaggcacgtcggcgcccactttctg
cgcgccgtcaccgacttcaacgaggtcaactaccacctgctcgagagcacctacgtccac
ctcttcttcaccaaggggcccctcggcggtgccaaggccgaggacaacggcgacggcatg
tttgtcgacggcggcggccacggcaacaacaccagcaacaacaacaacgcatcacacgcc
accggccagtcgagcaaggtcgcccagtgcacgcccatgggccagaagatgtacaacttc
ctcgtcaacgcgccgggcggcaacgagggcgtgcacatgaatgtcattgcgagcggcgcc
ggcatgagcatgcgcgacgtcctcggcgccgccgacgacctactcggccaggggctcgtg
tataccaccatcgacgatgagacgtggggccattctcgagtatttgagcgggtggcggtc
gggtga

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