Verticillium alfalfae: VDBG_08730
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Entry
VDBG_08730 CDS
T02227
Name
(RefSeq) CCR4-NOT transcription complex subunit 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
val
Verticillium alfalfae
Pathway
val03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VDBG_08730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
val03019
]
VDBG_08730
Messenger RNA biogenesis [BR:
val03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
VDBG_08730
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
VDBG_08730
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
CTD4
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
9534322
NCBI-ProteinID:
XP_003000934
UniProt:
C9SV05
LinkDB
All DBs
AA seq
525 aa
AA seq
DB search
MPKVVGQLALTSFRFLQPQPSNCSPIKTITPRTTAQLSRLSNQKAFNSHRTSSIVTVAHR
HPRPLASTSLHDTVGTTPPATSHHDWGTRPHQRASPACIPRTTANARPRTSSAPSVISPP
RQSSPRAGHCLGPFQSGMPPPPLRYPGGPNTIPPSYHQQFSSHAQGHGAAHGPPLGGNPS
YLNANSQSSPFSIGGNVLGGVGALNGGFGVGADTGGLGSHAARMGFQQAANIHQQQQHGQ
GQHGFGADHGGANMRGGHNKGRIREVWKHNLHEEMAVLRDLVDKYPYIAMDTEFPGIVSR
PMGGFRGKSDYHYQCLRTNVDMLKVIQIGLALFNEEGETPPARPSSADLADFGPAGRRSA
QQGPFPYAWQFNFKFSLKDDMYNEKSIESLQTAGIDFNLLERDGIDPHDFASLLIPSALV
CFDNMREKIFNGDIADDHVWGLGIPDGGLLMGHMMGTHAGAGGAGSHEPNGQQQNGTPST
PNTVSAGLVSTPGAQSHNTNGFNTGPMTPGGGGGVFGSFAFNANR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggttgtcggtcagctggccctgacctcgttcaggttccttcaacctcaacca
tcgaactgtagcccgatcaagacaataaccccccggaccacagcccagctatcgcggctg
agcaaccaaaaagcattcaattcccatcgcacttcgagcatcgttaccgtcgcgcaccgc
catcctcgaccccttgcttcgacatccctccacgacacggtcggcacgactccacctgcg
acaagtcaccacgactggggcacgaggccacatcagcgagctagcccagcctgcatccct
cgaaccactgccaatgcaaggccgaggacatcgtcagcaccctcagtcatttcaccacca
cggcaatccagcccacgcgctggtcactgccttggacctttccaatctggcatgccgcct
cccccgctcaggtaccctggcgggcccaacacgataccgccctcttaccaccagcagttc
tcctcccacgcccagggacatggtgctgctcacggcccaccgctaggtggcaacccttcc
tacctcaatgccaactcgcaaagcagccctttctccatcggcggtaacgtcctcggcgga
gtcggagctcttaacggagggttcggcgtcggcgcggacacaggagggctcggcagccat
gctgcgcgcatgggcttccaacaggccgccaacattcaccagcaacaacagcatggccag
gggcagcacggcttcggtgctgatcacggcggtgccaacatgcgcggcggtcacaataag
ggcaggatacgagaggtgtggaagcacaacctccacgaggagatggccgtgctgagagac
ctggtggacaagtatccttatattgctatggacaccgagttccccggtatcgtgtcacgg
ccaatgggaggcttcaggggaaagagcgactaccactaccaatgcctgcggaccaacgtc
gacatgctcaaggtcatccagatcggtctcgcccttttcaacgaagaaggcgaaaccccg
cctgcgcgtccgagctcggcggacctggcagactttggcccggccggccgacggagcgcc
caacagggaccgttcccttacgcgtggcaattcaactttaagttttccctcaaggacgac
atgtacaacgagaagtcgatcgagtccctgcaaaccgcgggcatcgacttcaacctgctc
gagcgcgacggcatcgacccccacgactttgccagtctcctgatcccatcggcactggtc
tgcttcgataacatgcgcgagaagatcttcaacggcgacattgccgacgaccacgtgtgg
ggtctcggcatcccggacggcggcctcctcatgggccacatgatgggaacccacgccggc
gccggtggtgcgggctcacacgagccgaacggccagcagcagaacggcacgcccagtacg
cccaacacggtcagcgccggcctcgtcagcacgcccggcgcgcagtcgcacaacacgaac
gggttcaacacggggccgatgacgcccggcggcggaggcggcgtctttggcagcttcgcc
ttcaacgccaaccgctag
DBGET
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