Verticillium alfalfae: VDBG_08955
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Entry
VDBG_08955 CDS
T02227
Name
(RefSeq) hypothetical protein
KO
K13103
tuftelin-interacting protein 11
Organism
val
Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:
val00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
val03041
]
VDBG_08955
Spliceosome [BR:
val03041
]
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
VDBG_08955
Other components
Complex C specific factors
VDBG_08955
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GCFC
G-patch
TIP_N
G-patch_2
ATP-synt_E
Motif
Other DBs
NCBI-GeneID:
9534553
NCBI-ProteinID:
XP_003001159
UniProt:
C9SVN0
LinkDB
All DBs
AA seq
853 aa
AA seq
DB search
MCDRSCSAKEKQACFLRRPELGTAARQSPPFRCLRRTKGKGAPAVCLPAHASAHATLAHD
NYMSRMTAWAENASQFNTAPSSLTDVKPLDEAPKQRKKKVTSRPALKGLSQRHLVYAPLL
AQHTSDGAKESATMSAFPMFDPSRLTKKSAAAQYSSDSEEDNDDEFTTSIVDPAAGDDFH
NSNPRKRRRVGESKDRAALGIFASDSEDDGPGKRWKKKTLRGKGMSFVSTGTMANAQDEK
EYSDDSDRNGPPAAEDDDEEEEEEEAAGVGLGFRSATYGGLGFAPATKDEDTEMQGQDGT
PYKPSFVKTKFDGRNPLGRGFVPSSARQPVLTNFEDDEKPKKPTIARPSAFAPSRDGKGN
TSKPNPKSFGARMMAKMGYVEGTGLGKESQGRNVIIEANLRPQGVGLGAVKEKSVSERRE
EKRQAELRGEVVIDSDEEERKKKREKKKKLGASGVSSGTSTPRRQKTAFITAEEIKRTAP
GLHIPDAFAPILDMTGPGNKLLTSASGLLTPTSAAAPESAEAIEARKIVRRAHADLAAFS
EEWRSLEERKSWVELELRQHEQETADLAADLERMQVFAGIVTNELPVPPSGKTGSDVFKR
PSMPLALPLWYPKARGGIRDWDVYDPAPLLAVLEAWNSLLPAFVRAQFLQDVVRKLETAV
SEWNPRKKRQSYKLPHLWLFPWLQYLPSYHLDPKSTGLVADVRRKFRQLVDVWEFDRGVV
PGLTQWRDVLGSQWQPLIMSHVLPSMGRYLRENFRVDPGDQEPYLPMLTGTLKWSSVLGS
KVLAEVIVAEVFPLWHDKLGEWLQLEEVNLEEVYAWYEWWRDQVFPKELATLPVITKEFD
KGSLTIERALERM
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgatcgatcatgttccgcaaaagagaaacaggcttgtttcttgcgacggccagaa
ttgggaactgctgctcggcaatctcctccctttcgctgccttcgccgtaccaaaggcaag
ggggcacctgctgtctgcctccccgcccacgcgtcagcacatgccacgcttgcacacgac
aattacatgtcgaggatgacggcatgggctgagaatgcctctcagttcaacaccgcaccg
agcagcttgaccgacgtaaagccccttgatgaggcacctaagcaacgtaaaaagaaagtc
acgtcacgtcctgccttgaagggcctctcccaacgccacctggtctacgcgcccctcctc
gcacagcacacatctgatggtgccaaggaatcagcgaccatgtctgcgtttcctatgttc
gatccctctcgcctcacgaagaagtctgccgctgcgcaatactcgtctgattctgaggaa
gacaacgacgacgagttcaccacctcgattgtcgatcccgccgctggagatgacttccat
aactcgaatccacggaaacgacgtcgcgttggggagtccaaggaccgcgcagctttgggt
atctttgcctctgacagcgaggatgacggcccgggcaaacgctggaagaagaagacgctt
cgcggcaagggcatgagtttcgtatctacagggacaatggccaacgcccaagacgaaaaa
gaatattcggacgacagcgatcgaaacggaccaccagcagccgaggatgatgacgaggaa
gaggaagaggaagaggccgctggggttggcctgggatttcggtcagcaacgtatggcggg
ctcggcttcgcaccggcgactaaagacgaagatacagagatgcagggtcaagatggtacc
ccatacaagccttccttcgtgaaaacaaaatttgacgggcgcaacccactgggccgtggg
ttcgtaccatcatcagcgcgacaacctgtgttgacaaacttcgaggatgatgagaagccg
aagaaaccgactattgcacggccaagtgcttttgcgccgtctcgagacggcaagggcaac
acaagcaagccgaaccccaaatcttttggggcgcgcatgatggccaagatgggctacgtc
gagggtaccggtcttggtaaagagagccagggacgaaacgtcatcattgaagccaacctt
cgacctcaaggtgttggtctaggtgcggtcaaggaaaaatccgtgtctgaacggcgtgaa
gagaagcggcaggccgagctgcgcggcgaggtcgtcatcgattcggacgaagaagagagg
aagaagaagcgcgagaagaagaagaagctgggcgccagtggtgtcagcagtggtaccagt
actcctcgacgacagaagacggcattcatcacggcagaggagatcaagaggacggcaccc
ggtctacacattcctgatgcttttgcgcccattctcgacatgacaggcccaggcaacaaa
cttctgacatcggcctctggattgttaacacccacatctgccgccgcgcctgaatcggct
gaagcgatagaagcacgcaaaatagtcaggcgagcacatgccgacttggcggctttctcg
gaggaatggcggagtctcgaggagcggaagagctgggtcgagctagagctgcgacagcac
gaacaggagacagcagacttggccgctgacctggaaagaatgcaggtgtttgccggcatc
gtcactaacgagctgccggtgccaccgagtggcaagacaggatccgatgtcttcaaaagg
ccatcgatgccgttggccctcccactttggtaccccaaggccaggggtggcatccgagac
tgggacgtgtacgaccctgcaccccttctagcagtgctagaggcatggaactctctactg
ccagcgttcgtacgcgctcagttccttcaggacgtggtacggaagctggagacagccgtc
agcgaatggaacccgcgcaagaagcgccagagctacaagctccctcacctgtggcttttc
ccctggttgcagtaccttccgtcctaccatctggatccaaagagcaccggccttgtggcc
gatgtgcggcgcaaattcaggcaacttgttgacgtgtgggaatttgacaggggcgtcgtg
cctggtctcacgcagtggcgcgacgttctgggaagtcagtggcagccgctcattatgtcg
catgttttgccgagcatggggcgctacctgcgggagaatttccgcgtcgaccctggcgac
caagagccttacctccccatgctcacagggacgcttaagtggtccagcgtgctgggatcc
aaggtcctggctgaagtcatcgtggccgaggtgttcccgctctggcacgacaagctaggc
gagtggcttcagctggaggaggtcaatcttgaggaggtgtacgcatggtacgagtggtgg
agggaccaagtgttcccaaaggagttggccacgctgcctgtgattacaaaggagtttgac
aagggatcactgacaatcgagagggcgcttgagaggatgtag
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