Verticillium alfalfae: VDBG_09412
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Entry
VDBG_09412 CDS
T02227
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
val
Verticillium alfalfae
Pathway
val03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
val00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
VDBG_09412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
val03021
]
VDBG_09412
03036 Chromosome and associated proteins [BR:
val03036
]
VDBG_09412
Transcription machinery [BR:
val03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
VDBG_09412
Coactivators
SAGA/TFTC/STAGA complex
VDBG_09412
Chromosome and associated proteins [BR:
val03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
VDBG_09412
STAGA complex
VDBG_09412
TFTC complex
VDBG_09412
SAGA complex
VDBG_09412
SLIK complex
VDBG_09412
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
TFIID_NTD2
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_HPS5
NBCH_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
LisH
Beta-prop_IFT122_1st
eIF2A
Beta-prop_EIPR1
Beta-prop_SPT8
WD40_RFWD3
VPS8_N
Beta-prop_Nup120_160
Beta-prop_NOL10_N
Motif
Other DBs
NCBI-GeneID:
9527917
NCBI-ProteinID:
XP_003000217
UniProt:
C9SXB2
LinkDB
All DBs
AA seq
759 aa
AA seq
DB search
MSGAGAPGGPPGGNGPPSAGPQQSNFTPSQQPVTPGTAVAATAAPAAAAPAAAQPPMSNQ
NLNQIVTDYLLKRGFTRTENIFRQESSHLGPDGRPIQAKVDDLGPQKYRKAFNMLRDWVP
MADIFQFELGKLLWPVFVYSWMELINQGYLDDAKNLLTGLKPFFEAGHADDLKTFDTISI
PHHLKENATCKLYTENKFRIPLNQHVTGNLFHFLEREKENGGAVIIYILQTFCQIDSTAR
GPIEPFSFEAIYRRTQNMTLDEIDDNEGIPGISLGLTNRDMLDTSVALRLGPMPMDEDLR
DDVRAELAEADQRNPPTEGKASLADEFEQKIKREESADAPSRSDLPLPPSRARDVVMEMQ
KVRENRDRFKIEGRTGGVGVPISACIVSCLDFSKDHELVAAGTTDSYIRVWTLDGKALKS
KAAHDLDFKANNRKLIGHSGPVYDVAFSDAIASGNHTPFAHEGKGNSAIDTGAKLLLSAS
ADGHVRLWSLDLWQCLCIYKGHDGPVMRVSWSPHGHYFVSGGWDKTARLWMQDHASAMRL
LVGHNTSISALTWHPNGTYLFTASDETDKSIRMWSVVTGGCVRVFTGHNEYISSLTCAPN
GKILASGDTGGNIMFWDIEKGTRIKRSRGHAKGGIWSMDFSVESNVLVSGGQDGTVRLWD
VELPADGHKAIPQQGAAPTQEGGEGAPATGGAVERGTTGSQGSSGTGSGGIGGGKKKGKE
VMITPDQISAFPTKKTPVMAVQFTRMNLVVAGGCYDPER
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcgctggagcccccggcggtccgccaggaggcaacgggccccccagcgctgga
ccgcaacagagcaacttcacgccgtcgcagcaacctgtaacaccaggcacagccgtcgca
gcaacagcagcaccagcggcggccgctcctgccgcagcacagccgcccatgtcgaaccaa
aacctcaaccaaatcgtcaccgactacctcttgaagcgcggcttcacgagaactgagaac
atcttccggcaggaatccagtcatctgggtcccgatggccggcccattcaggccaaggtc
gacgacctgggtcctcagaagtataggaaggccttcaacatgctgagggactgggtgccc
atggctgacatctttcagttcgagctcggcaagcttctctggcccgtttttgtctactca
tggatggagctcatcaaccagggctaccttgatgatgccaagaacctcctcactggcttg
aagccctttttcgaggccggacatgccgatgatctcaagacgtttgacaccatctccatt
ccacaccacctcaaggaaaatgcgacttgcaagctttacactgagaacaagttccgcatc
cctctcaatcagcatgtcaccggcaacctgtttcacttcctcgagcgagagaaggagaac
ggcggcgctgtcatcatatacatcttgcagaccttttgccagattgactcgactgctcgt
ggccctatcgagccctttagcttcgaggccatctatcgccggacgcagaacatgaccctg
gatgagattgacgacaatgaaggcatacctggcatatctcttggcctgacgaacagggac
atgctcgacacgtctgtggcgttgcgtctgggacccatgccgatggacgaagatttgcgc
gacgacgtgcgggctgaacttgctgaggcggatcaacgcaaccctcccaccgaaggcaag
gcatcgctcgcggatgagtttgagcagaagatcaagcgtgaagagagcgccgatgctccg
tcaaggtctgaccttcccctgccgccctctcgcgcgagagacgtcgtcatggagatgcag
aaggttcgggagaaccgcgatcgcttcaagattgagggccgcacaggcggcgttggtgtt
cccatcagcgcttgcatcgtctcatgcttagacttttccaaggaccatgagttggtcgcc
gcgggtactacggactcctacatccgcgtgtggactctggacggaaaggctcttaagtcc
aaggctgcccacgatctcgatttcaaggccaataatcgcaaactcatcggccactccggt
cccgtttatgacgttgccttttccgatgccatcgcaagtggaaaccacactcctttcgct
cacgaaggcaagggcaatagtgccattgacacgggagccaagcttctgctttcagcctct
gcggatggccatgtccgcttgtggtctctagatttgtggcagtgtctgtgcatctacaag
ggccatgatggtcccgtcatgagagtttcgtggagcccgcacggtcactacttcgtcagc
ggcggctgggacaagacggctcgtctctggatgcaggaccacgcctcggctatgcgcctt
ctcgtcggccacaacaccagcatctctgctctgacttggcaccccaacggcacttacctc
ttcacagcatccgacgagactgacaaatctattcgcatgtggtctgtcgtcacgggcggc
tgtgtccgtgtcttcactggccacaacgaatacatctcctcactgacatgcgcgcccaat
ggcaagatcctcgccagtggtgatacaggtggcaacatcatgttctgggacatagaaaag
ggcacgcggatcaaaaggtcgagaggccacgcaaagggcggtatctggtcgatggatttc
agcgtcgagtccaacgttctcgtttccggaggccaagacggcactgttcgtctctgggat
gtcgagcttcccgccgatggccacaaagctatcccacagcagggcgctgcgcctactcag
gagggcggcgagggcgcacctgcgacgggcggggccgtggagcgcggtactactggtagc
caagggtcatcagggaccggttccggcggcatcggcggaggcaagaagaagggtaaggag
gtgatgatcacgcccgaccagatcagtgccttcccgacgaagaagacgcccgtcatggcg
gtgcagttcaccaggatgaacctcgtcgtagctggcgggtgttatgatcctgagcggtga
DBGET
integrated database retrieval system
