Verticillium alfalfae: VDBG_09853 Help Entry VDBG_09853        CDS       T02227                                  Name (RefSeq) cft-1   KO K14401   cleavage and polyadenylation specificity factor subunit 1 Organism val  Verticillium alfalfae Pathway val03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:val00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     VDBG_09853  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:val03021]     VDBG_09853    03019 Messenger RNA biogenesis [BR:val03019]     VDBG_09853 Transcription machinery [BR:val03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      VDBG_09853 Messenger RNA biogenesis [BR:val03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage and polyadenylation specificity factor (CPSF) complex      VDBG_09853 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CPSF_A MMS1_N PBP1_TM Motif Other DBs NCBI-GeneID:  9531850 NCBI-ProteinID:  XP_002999813 UniProt:  C9SY78 LinkDB All DBs AA seq 1349 aa AA seqDB search MQCYTELVPPTLVTCSVSLPFTSAKTENLIVSKGSLLQIFAVKTVSTEIDTSQIQAKSSS KAGETYDRRINDDDGLESAFLGGDGMLMRADRTTNTRLVLVAEYPVHGVIAGLARVKIQS SRSGGEALLVHSRTARLSLLQWDPEKHGVEDVSIHFYEKEEWQGGRPRPEEEPPAAAAVN GTSSSSSSVAPVPYTPSFVLALPQLDPEILHPVHFAFLHEYREPTLGIISSSNRRLKMEP QMDHFTFKVFTVDLLQKASTAILTVSNLPQSLKKVVALSKPMGGALLIGENELIHIDQAG KAHGVAVNPYAAKMTKFPLADQSELKLRLEHCEVELMSPDNGEMLLVTRHGEMAVVTFKM DGRSVSGVSVKVVATENGGDILPFRAACLTKVSKNSMFYGTIGGDSQVIGWSRQHVQTAR KKARLLDESLDYDLDEDELDDDDDDDLYGEGTVAPQPSAAAGSAKGGDVVFRVHDSLLSL SPIMDMAYGKTAFFPGSEEAKNSEGVRSELDLVCAVGRHRGGSLALINQHIQPRVIGRFE FPEARGFWTTRVQKTIAKSLQGEKGANLAVGNDYGSVTQYDKFMIVAKVDLDGYETSDVY ALTGAGFEALSGTEFDPAAGLTIEAGTMGNDMRIIQVLRSEVRCYDGDLGLSQILPMLDE ETGAEPRVISASIVDPYLLLLREDSSILVAQITNHNELEELDKEDETIVSTKCSAGVSTR IRTASLHPCRPDKGGRRPSESVFQCSLLNATGELHVYALPDLSKPIYVAAGLSYIPSLLS ADYAVRRGTSPETLTEILVADLGDSTSASAHLILRHANDDMTIYEPFRIGGQEERKGLAT SLFFKKVSNSHLAKSPVEAAEDEAVQENRVIPLRACDNIGGYSTVFVPGASPSFILKSSK STPKVIGLQGLGVNGMSSFHTEGCERGFIYADSKGCARVTQFPDAANVAELGVDDDYHKE WAKEECPMPPMKEHGSIKLYSPITWNVIDEFELEQYEVAMCMKTLLLEVSEETKERRMLF AVGTAILRGEDLPVRGRILVFDVVHVIPQPDRPETDRKLKLIAKEEIPRGAVTSLCEKCM VRGLRRWHAAAVALPDLSTYVVAVHELRNTGYCLMADANMGVWFVGYSEEPYRMTLFGKS GTQLKCLTADFLVAGNDLSIVASDEDGVLHILQFDPEHPRSLQGHLLLNRASFSVAPNHA WVTLALPRTTTRPYLPQSEPATNAAGSQNRTQTLLLASASGAIASLNPITEHAYRRLTSL TTSLANALPHAAGMNPKAHRLPPQDGAARPPAVDVSAGRTIVDGALLARWNELGARQRAE AAGKGGFASAADVRGELEDVLGWRGVDYF NT seq 4050 nt NT seq  +upstreamnt  +downstreamnt atgcagtgctacaccgagctcgttcccccgacgctggtgacctgctccgtgtcgcttccc ttcacctcggccaagaccgaaaacctcatcgtctccaagggctcgctgcttcagatcttc gccgtcaagactgtgtccaccgagatcgacacgtcgcagatccaggccaagtcgtcgagc aaggctggcgagacctatgacaggcgcatcaacgacgacgatggtctcgaatccgctttc ctcgggggcgatggcatgctcatgcgcgccgaccgcacaaccaacacacgtctcgttctc gttgccgaataccctgtccacggcgtcatcgcaggcctggcgcgcgtcaagatccagagc tccaggtcaggcggcgaggctctgctcgtccacagtcgcacggcgcggttgagtctcctg cagtgggaccccgagaagcacggcgtcgaggacgtttccattcacttttacgagaaggag gagtggcagggtggacggccgcggccggaagaggagccgccagcagctgcggccgtcaat ggaactagcagcagcagcagcagcgtagcacctgtaccatacactccctccttcgtcctc gcgctgccccagcttgatcctgagatccttcaccctgtgcacttcgccttcttgcatgag taccgcgagcccaccctcggcatcatctcctccagcaaccgccgcctcaagatggaaccc caaatggaccactttaccttcaaggtctttaccgtcgacctcctccagaaggcctcgacc gccatcctcaccgtctcgaacctgccgcagtcattgaagaaggtcgtcgctctgtcgaag cccatggggggcgccctcctcatcggcgagaacgagctgatccacatcgatcaggccggc aaggcgcacggcgtcgccgtcaatccgtacgccgccaagatgaccaagttccccctggca gaccagtccgagctcaaactgcgactggagcactgcgaggtcgagctcatgtcgcctgac aacggcgagatgctgctcgtgacgcggcacggcgagatggccgtcgtcaccttcaagatg gatggccgcagcgtctccggcgtcagcgtcaaggtcgtcgccacggaaaatggaggcgac atccttcccttccgggccgcgtgtctgaccaaggtcagcaagaacagtatgttctacggc acgatcgggggtgactctcaagtgatcggctggagcaggcaacatgtgcaaacggcacgg aagaaggcgcgtctgttggatgagtcactcgactatgacctcgacgaagatgaactggac gacgacgacgacgacgacctgtacggcgaaggcacggtggcccctcaaccttcggctgcc gctggatcggccaagggcggagacgtggtatttcgcgttcacgattcgctgctcagcctg tcccccatcatggacatggcatatggcaagacggccttcttccccggcagcgaggaggca aagaactcagaaggcgtacggtccgagctcgacctcgtttgtgccgtcggacggcatcgc gggggttcccttgctctcatcaaccagcacattcagcccagggtcatcggacgctttgag tttccggaagctcgtggcttttggacgacgcgcgtgcagaagacgattgccaagtcactc cagggggagaagggggccaatctggccgtcggcaacgactacggatctgtgacgcagtat gataaatttatgattgtggccaaggtcgacttggacggctacgaaacgtccgacgtctat gcactcacgggtgcaggctttgaggctctgtctggcaccgagttcgaccccgccgctgga ctgacgatcgaggccggaacgatgggcaacgatatgaggatcattcaggtgctccgttct gaagtccgttgttacgacggagatcttggtctcagccagatacttcccatgctggacgag gagacgggcgccgaaccgcgcgttattagcgctagcatcgtagacccataccttttgctt ctgcgcgaggactcgagcattcttgtcgcccagatcacgaatcacaacgagctggaggag cttgacaaggaggacgaaacaatcgtctccaccaagtgctcagcgggtgtctctacaagg attcgcacggcctctttgcacccgtgcagaccggacaaagggggacgtcgacccagcgag agcgtctttcaatgttctttgctcaacgcgacaggcgaactccatgtttacgcactgccc gacctctcaaagcccatatatgtcgccgccgggctttcttacatcccatcccttctttcc gcagactacgccgtccgccgaggcaccagtcctgagactctgaccgagattctggttgct gacctcggagactctaccagtgcatccgcacacctgattctacgacatgccaatgatgac atgacaatatacgagccgttccggatcggcggtcaagaggaaaggaaaggcttggccacg tctctattcttcaaaaaggtgtccaattcacacctcgccaagagcccggtcgaggctgct gaggatgaggccgtccaggagaaccgtgtgattcctctacgagcttgtgacaatatcggt ggttacagcaccgtctttgtcccgggagcatccccatccttcatcctcaaatctagcaag agcacacccaaggtcatcggccttcaaggcctcggcgtcaacggcatgagctccttccac acggagggctgcgagcgcggattcatctacgccgactccaaaggctgtgctcgcgttacg caatttcctgatgccgccaacgtggccgagcttggcgtggatgatgactaccacaaggag tgggccaaggaggaatgtccaatgccgcctatgaaggagcacggcagcatcaagctgtac tcgccaattacctggaacgtcattgacgagtttgagctggagcagtacgaggtcgccatg tgcatgaagacgttgcttctcgaagtgtcggaagagacgaaggagcggcgcatgctcttc gccgtgggcaccgccatcctccgcggagaggacctgccggtccgcggccgcattctcgtc ttcgacgtcgtccatgtcatcccacagccagaccgacccgagacggaccgcaagctaaag ctcatcgccaaggaggagatcccgcgcggcgccgtcacctcgctctgcgagaagtgcatg gtccggggtctcaggagatggcacgctgctgccgtggcccttcccgatttgagcacctac gtggtcgccgtacacgagctgcgcaatacgggctactgcctcatggcagacgccaacatg ggcgtgtggttcgtgggatactcggaggagccctaccggatgacgctctttggcaagagc ggcacgcagctcaagtgcctgacggctgacttcctcgttgccggcaacgacctgagcatc gtggcgtctgacgaggacggcgtgctgcatatcctgcagttcgatcctgaacacccccga tctctccagggccacctccttctgaaccgtgcctccttctcggtggccccgaaccacgcg tgggtcaccctcgccctccctcgaacaacgacccgtccctacctacctcaatcggagccg gccaccaacgccgccgggtcccagaaccgcacgcagacgctcctcctcgcctcggcctcc ggcgccatcgcctctctgaatccgatcaccgagcacgcctaccgccgcctgacctcgctg acgacgtccctcgccaacgccctaccgcacgccgccgggatgaaccccaaggctcacagg ctgccgccccaagacggcgccgcgcgcccgccggccgtcgacgtctcagccggcaggacc atcgtcgacggcgcgttgctggcgcggtggaacgagctcggcgcgcggcagagggctgag gccgccggcaagggcggcttcgcttcggccgccgacgtcaggggggaactcgaggacgtg ctcggctggaggggagtggactatttctaa

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