Verticillium alfalfae: VDBG_10200
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Entry
VDBG_10200 CDS
T02227
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
val
Verticillium alfalfae
Brite
KEGG Orthology (KO) [BR:
val00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
val03009
]
VDBG_10200
Ribosome biogenesis [BR:
val03009
]
Eukaryotic type
90S particles
Other 90S particles
VDBG_10200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1
S1_RRP5
OB_RRP5_4th
Spt6_S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_C
TPR_19
Suf
NRDE-2
UTP6_C
Motif
Other DBs
NCBI-GeneID:
9536631
NCBI-ProteinID:
XP_003009828
UniProt:
C9SZ75
LinkDB
All DBs
AA seq
1789 aa
AA seq
DB search
MGSLKRKEAPGGDIPSKKAKSSKDTRPAKSDKPSTSIRDGADSQKRASSGADAPKSVISS
ILKDEEPMFPRGGGSVLTPLEQKQIQLEAKADALREGEFDTEEKTKHKKEKRRKSKLGAF
EDTKKKSSSDEDGTKIEALNYKRLAKGSVVLGQVSAISHHNITIALPNNLSGNVSIAAIS
NVVTAKIQQAAEASDDDDSADENDDDDDIELNSLFEVGQYVRAYVLSTKEGEGSGKKNHI
ELSLRPEDANSGMSKNDVVANATVMAAVTSVQDHGYEMELGVDNKKLKGFLPKKDVGSEV
DELRLQPGAVSLCLVKSVSGKIAQLCLDSEKLGKADNIATEATTVNTFQPGTVVDVLVTS
TTGRGLLGKILGHLPVTADLIHSGAGPDAVDLDAKYKVGSRVKARVICTFPNAKNPKLGI
SLLPHIIKLQAKKAGKGGQAKPPLNVLPIAVRVDKCIVRKVEPEIGLYVDVGVAGLSGFV
HISKVKDGKVEALYESSGPFKEGSVHRGRVIGYSAFDGMYLMTFEPTIIEQQFIRLEDVP
AGEIVSCTIEKVVVGGQGVSGLVVKVAEGITGYVHETHFADVRLQHPEKKFREGMTVKAR
VLSVRPRKRQMRLTLKKTLVNSDTPIIKSFDEVEVGQQALGTISDISPHGARIEFYKGVR
GWLPVSQMSEAFIQDPKEHFKVGQVVNVHILEVDPENQKLLVSCKDPSAFGLDKQAALKA
LSVGSIVSGKVIQKSDDDVHVELDGSNLKAILPLGQLTDKSANKSQSALKRIHMGQTLTD
LLVLDKNERRRAITLSSKPSLVEAGKTDKLIRTYADAKVGAEVPGFISSIRPGAVLVRFG
GNLVGVMFKTRLPVEDQEKEGFGLRKDQSITVRIRAIDLERTRLVVDPLTAELPSNEVKP
KKEKESARPQAHGPVQDITFGQIVEAKIVGIHDTQLNVETADKVQGRVDISQIFDSWDKI
KDPEEPLSQFKKGDTVRVRAIGLHDSKDHRFLAFSHRSYNSVLEFTAKASDIEADVLKPL
SLEDLEVGSTHVAFVNNASRNGLWANISPVVRGRINAMDVSDDTSKINDVINNFPIGTAL
KVRVIAVDAKRGVLDLSARSDSSAAVTWDSIKPNQVLAGCVVKVNERQIMVKLGSNVAGH
VHLVDMSDDFGDVNTLKYDEGDAIQVSVVEVDKSNKRVRLSTRPSRVLNSSSPITDSEIT
SVKQVVSGSTVRGFVKHVADKGVFVLLGGSVSALVKISNLSDRFLKEWKEHFQVDQLVKG
RVLSVDEGAGQVELSLKSSVVDDNYKPLKTYKDIKPNQIVTGKIRKVEDFGAFIVVDGSD
NVSGLCHRSEMADSPVEDARKLYQAGDVVKAKVLTLDRNKKRISFGLKPAYFDEDVDMDE
GEGAGLDSDNEDEEDVDSDEGEDLAEGGASIKFMGTDNLEDSDDEQDHADSDSDVDEDGD
VDMSMEQNGLSNGKYDWDGDAFDDSDKETRSAPAKSSASKQKETKKPKTDEIQVDRTVAL
DANGPQTASDYERLLLGQPDSSALWIAYMALQMRVSELTKAREIAERAIKTINIREQTEK
LNVWIAYLNLEVAYGTKTTVEEVFQRACQYNDDQEIHERLATIYIQSGKHKKADELFQAT
VAKFGSKNPNLWTNYAHFLHATLNQPDRARALLPRATQALGEQHTAALMAKFGSLEFRSP
NGDAERGRTTFETLLATWPKRFDLWNQLVDLEMAAPGADATAVRDVFERGTKVKGLKAQR
AMKWFKRWAEWEGKTDPKGKERVMAKAAEWVTAAKARKEAGAAEDEDME
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgggctcactcaaacgaaaggaagccccgggtggcgatattccctccaagaaggcaaag
tcttccaaggatacccgaccagccaagtccgacaagccgtcaacctcgatcagagatggc
gccgacagccagaagcgggccagctccggtgctgatgcacccaagtcggtcatttctagc
atcctcaaggacgaagagcccatgttccctcgtggtggcggcagcgtcctgacgccgctt
gagcagaagcagattcaacttgaggcgaaagccgatgccttgagagagggcgaattcgat
accgaggagaaaaccaagcacaagaaagaaaagaggaggaagtccaagctcggcgccttt
gaagataccaagaagaagtcctcgtcagatgaggatgggaccaagattgaggccctgaac
tacaagcgtctcgcaaagggatctgttgtcctcggtcaagtctctgccatttctcaccac
aacatcaccatcgcattgcccaacaacctcagtggcaatgtatcaattgccgccatttcc
aatgtcgtcacggcgaagatccagcaagcagccgaggcctcggacgacgacgacagcgcc
gacgagaacgacgatgacgacgacattgagctaaactcgctcttcgaagtcggccagtac
gtccgtgcctacgtcctctctactaaggaaggcgaaggctcaggaaagaagaaccacatt
gagctgtcactgcgccccgaagacgccaattccggcatgtcgaagaatgatgtagtcgcc
aacgctaccgtcatggcggccgtcaccagcgttcaggaccatggttatgagatggaactg
ggagtcgacaacaagaagctcaagggctttctgccgaagaaggatgtcggctctgaagtc
gatgagttgagacttcagcccggcgcggtgtctctctgccttgtcaagagtgtctcgggc
aagattgcccagctttgcctggactcggagaagctgggaaaggccgacaacattgctacc
gaggccaccaccgtcaacactttccagccgggcaccgtggtggacgttctggtcacgagc
accaccggtcgcggcctcctcggcaagatcctaggtcacctcccagtcactgccgacctc
attcactccggtgccggtcctgacgctgtggacctcgatgcgaagtacaaggtcgggtcg
cgcgtcaaagcccgcgtcatctgcacattccccaacgcaaagaaccccaagctcggcatc
tcgctgctccctcatatcatcaagctgcaagcgaagaaggccggcaaaggcgggcaagcc
aagccccccctcaacgtactgcccatcgctgtccgcgttgacaagtgcattgtacgcaag
gttgagcctgagatcggtctttacgtcgacgtcggcgtcgcagggctgtctggcttcgtc
cacatctcaaaggtcaaggatggcaaggttgaggcgctctatgagtcgagcggcccgttt
aaggagggttctgttcaccgtggtagggtcattggctacagcgccttcgatggcatgtac
ttgatgacgtttgagcctaccatcatcgagcagcaattcatccgtctggaggatgtgcct
gccggtgaaattgttagctgcacgatcgagaaggtggtcgttggtgggcagggcgtcagc
ggcttggtcgtcaaggttgctgaaggcatcaccggttatgtccacgaaacgcactttgcc
gatgttcgcctgcagcaccctgagaagaagttccgcgaaggcatgaccgtcaaagctcgc
gtcctgtccgttcgtcccaggaagcgacagatgcggctgacactgaagaaaacgctggtc
aactcggatacgcccatcatcaagagctttgatgaggttgaagtcgggcaacaagctctt
ggcaccatcagcgacatctcacctcacggcgcccgcatcgagttctacaagggtgtccgg
ggctggctgcctgtctctcaaatgagcgaggcatttatccaggaccccaaggagcacttc
aaggtcggccaggtcgtcaacgttcacattctcgaagtcgacccagagaaccagaagttg
ctggtatcttgcaaggacccgtccgctttcggcctcgacaagcaggctgcgctcaaggcc
ctatctgtggggtcgatcgtgtcgggcaaggtgattcagaagtctgacgacgatgttcac
gttgagcttgatggatccaacctcaaggctatcctgccccttggccagcttactgacaaa
tctgccaacaagagccagtctgccctcaagaggatacacatgggccagaccctcaccgac
ctcctggtcctcgacaaaaatgaacgtcgccgcgcgatcaccctgagctccaagcctagc
ctcgtagaggctggcaagacagacaagcttatccgcacgtacgctgacgccaaggttggc
gccgaggtgcctggtttcatcagctccatccgacccggcgcagtccttgttcgatttggc
ggtaacctcgtcggtgtcatgttcaagacgagacttcccgtcgaggatcaagaaaaagag
ggctttggtttgcgcaaggatcagagcatcaccgtccggatccgtgccattgatctcgag
aggacccgtctcgtcgtcgaccctttgacagcagagcttccaagtaacgaggtgaaaccc
aagaaggagaaggagtccgccaggccccaggcccacggtcccgtgcaggacatcacattc
ggccagattgtcgaggctaagattgttggcatccacgacactcagttgaatgtcgagacc
gcagacaaggtccagggccgagtcgatatttcccagattttcgattcttgggacaaaatc
aaggatcccgaagagccgctttctcagttcaagaaaggtgacaccgttcgtgtccgcgcg
atcggtcttcacgactcaaaagaccaccgtttccttgccttctctcaccggtcctacaac
tccgtcctcgagttcaccgccaaggccagtgacattgaggccgatgtactcaagcctttg
tccctggaagatctcgaggttggctccacgcacgtcgcctttgtcaataacgcctcccgc
aacgggctttgggccaacatctcgcccgtcgtccgcggtaggatcaacgccatggacgtg
tccgacgacacgtccaagatcaacgacgttatcaacaacttccccatcggcaccgcgctc
aaggtgcgcgtcatcgccgtcgatgcgaagcgcggtgtcctcgacctatcagctcgctct
gactcttctgcagccgttacctgggacagcatcaagccgaaccaggtccttgccggctgt
gtagtcaaggtcaacgagcgtcagatcatggtaaagcttggttcaaacgttgccggtcac
gttcaccttgtcgacatgagcgatgactttggtgacgttaacactctcaagtacgatgag
ggcgacgccattcaggtctctgtcgtggaagtggacaagagcaacaagcgcgtccgcctc
tcgactcgtccctctcgcgtcctgaactcatcgtctcccatcaccgattccgagatcaca
agcgtcaagcaggtcgtctccggcagcaccgtccgtggtttcgtcaagcacgtagccgac
aagggcgtctttgtgctgctcggtggcagcgtctccgctctcgtcaagatctccaacctt
tccgaccgtttcctcaaggagtggaaggagcactttcaggttgaccagctcgtcaagggt
cgcgttctgtccgttgacgagggcgccggccaggttgagctgagcctgaagagctccgtc
gttgatgacaactacaagcccctgaagacctacaaagacatcaagcctaaccagattgtc
accggcaagatccgtaaggtggaggactttggtgccttcatcgtcgtcgatggatctgac
aacgtcagtggcctgtgccacaggagcgagatggcggacagccctgtcgaagacgccagg
aagctctaccaagccggcgacgtcgtcaaggccaaggtccttacattggatcgcaacaag
aagcgcatttctttcggtctgaagcccgcgtacttcgacgaagatgtcgatatggacgag
ggcgagggcgctggtcttgattccgacaatgaagatgaggaggatgttgacagcgacgag
ggtgaggatctggcagaaggcggagcgtccatcaagttcatgggcaccgacaatctggag
gactcggacgacgagcaagaccatgccgactcggactcggacgtggatgaggatggcgac
gtggacatgtctatggagcagaacggactcagcaacggaaaatacgactgggatggcgac
gcatttgacgactctgacaaggagacccggtcagcgcccgccaagagcagcgcgtcgaag
cagaaggagacgaagaagcccaagacggacgagatccaggtcgaccgcacggtcgcgctg
gatgccaacggaccccagacggccagcgactatgagcgtctgctgcttggtcagcccgac
tcgtccgctctttggatcgcgtacatggcgctgcagatgcgggtcagtgagctgaccaag
gcgcgtgagattgccgagcgggccatcaagacgatcaacattcgcgagcagaccgagaag
ctcaacgtgtggatcgcgtacctcaacttggaggtggcctacggcaccaagacgaccgtc
gaggaggtgtttcagcgggcatgccagtacaacgatgaccaggagattcacgaacggttg
gcaaccatctacatccagtctggaaagcacaagaaagcagatgagctcttccaagctacg
gtcgccaagttcggctccaagaaccccaacctctggaccaactatgctcacttcctccac
gctacgctcaaccagcccgaccgcgcgcgcgctcttctgccccgcgcgacgcaggccctc
ggcgagcagcacacggcggccctcatggccaagttcggctcgctcgagttccgctcgccc
aacggcgacgccgagcgcggtcgcacgacgttcgaaacgctgctggcgacgtggccgaag
cggttcgacctgtggaaccagctcgtcgatctcgagatggcggcgccgggcgccgacgcg
accgccgtgcgcgacgtgttcgagcgcggcacaaaggtcaagggtctcaaggcgcagagg
gccatgaaatggttcaagagatgggctgagtgggagggcaagacggatcccaagggcaag
gagcgagttatggccaaggcggccgaatgggtgacggctgccaaggcaagaaaggaggcc
ggggctgctgaggacgaagatatggaatag
DBGET
integrated database retrieval system
