KEGG   Variovorax sp. PMC12: C4F17_00400
Entry
C4F17_00400       CDS       T05380                                 
Name
(GenBank) H-NS histone family protein
  KO
K03746  DNA-binding protein H-NS
Organism
vam  Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:vam00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vam03036]
    C4F17_00400
   03400 DNA repair and recombination proteins [BR:vam03400]
    C4F17_00400
Chromosome and associated proteins [BR:vam03036]
 Prokaryotic type
  Nucleoid associated proteins
   HNS (histone-like nucleoid structuring protein)
    C4F17_00400
DNA repair and recombination proteins [BR:vam03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      C4F17_00400
SSDB
Motif
Pfam: Histone_HNS TMF_DNA_bd Phage_scaffold AAA_13 Histone_HNS_N Packaging_FI HH_AprE HB_LcnD V-SNARE BSH_Fcp1 TENA_THI-4 FlxA kleA_kleC SlyX
Other DBs
NCBI-ProteinID: AVQ79519
LinkDB
Position
1:83317..83661
AA seq 114 aa
MASTLADINSQIKKHDEQIAQLRKQAEDLRNQERAGVIEELRKKIAEYGLTASDLKLTGR
ATAAKRSTGAAPAKAAAKYRGPTGETWSGGRGRKPRWVTEALAAGKSLSDYEIK
NT seq 345 nt   +upstreamnt  +downstreamnt
atggcttcgaccctcgcagatatcaattcccagatcaagaagcacgacgagcagattgcg
caattgcgcaagcaggctgaagacctgcgcaaccaggagcgcgctggcgtgatcgaagag
ttgcgcaagaagattgccgaatatgggttgacggcttctgatctgaaactgacgggccgc
gccaccgccgccaagcgcagcactggcgccgctccggcaaaggcagccgccaaataccgc
ggcccgacgggcgaaacctggtcgggtggccgaggccgcaagccgcgttgggtgactgaa
gcattggcagccggcaagtcgctctccgattacgagatcaagtaa

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