Variovorax sp. PMC12: C4F17_00430
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Entry
C4F17_00430 CDS
T05380
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vam03009
]
C4F17_00430
Enzymes [BR:
vam01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
C4F17_00430
Ribosome biogenesis [BR:
vam03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
C4F17_00430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRM5-TYW2_MTfase
Methyltransf_31
Methyltransf_25
RrnaAD
Methyltransf_11
TPMT
PCMT
Motif
Other DBs
NCBI-ProteinID:
AVQ79525
LinkDB
All DBs
Position
1:88400..89836
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AA seq
478 aa
AA seq
DB search
MTESIEEKKVPTNPGEEWLQVESLDLDAQGVSHKADGMVVFIEGALPFEEVQFNVHRRKN
NWEQGTVTAIRRESSQRVRPGCPHFGLHTGACGGCKMQHLDPAAQVAVKQRALEDNLWHL
GKVKPENLLRPLEGPAWHYRYRARLSVRHVVKKGTVLIGFHERKSRYLADMQVCPVLPKQ
VSEMLMPLRALIGSLDARDTCPQIELACGDAPDSTRLGTIALVLRHLEPLSRADIDRLKA
FAAQNEGVQWWLQAKGPDTVKLLEEGGTPLAYRLPEFGVTMPFKPTDFTQVNPHINRALV
GKALRLLDVQPDERVIDWFCGLGNFTLPLASKAREVLGIEGSDTLVARATDNYRTNQPAT
SARRALSPAKFVARNLFEMTPAMLVADGSADKWLVDPPREGAFALAKAMADLHQQPELRS
DGWTPPKRIVYVSCNPSTLARDAGLLVHQAGYRCTFAGVVNMFPHTAHVESIAVFDLE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgacggaatccatcgaagaaaagaaagtccccacgaatcccggtgaagaatggctgcag
gtcgagtcgctcgacctcgacgcacagggcgtatcgcacaaggccgacggcatggtcgtg
ttcatcgaaggcgcattgcccttcgaggaggtgcagttcaacgtccatcgccggaagaac
aactgggagcagggcacggtcacggccatccgccgtgaatcatcgcagcgcgtgcgcccg
ggctgcccgcatttcggcctgcacaccggcgcctgcggcggctgcaagatgcagcacctg
gacccggccgcccaggtggccgtgaagcagcgtgcgctggaagacaacctgtggcacctc
ggcaaggtcaagcccgagaacctgctgcggccgctcgaaggcccggcgtggcattaccgc
tatcgcgcgcggctgtcggtgcggcacgtggttaagaagggcacggtgctgatcggcttc
cacgagcgcaagagccgctacctggccgacatgcaggtgtgtccggtgctgccgaagcag
gtcagcgaaatgctgatgccgctgcgcgcgctgatcggctcgctcgacgcgcgagatacc
tgcccgcagatcgaactcgcctgcggcgacgcaccggactccaccaggctcggaaccatc
gcgctggtgctgcggcacctggagccgctgtcgcgcgccgacatcgaccgcctgaaggcc
tttgcggcgcagaacgagggcgtgcaatggtggctgcaggccaaggggcctgacacggtc
aagctgctcgaggagggcggcacgccgctggcttaccggctgcccgaattcggcgtcacg
atgcctttcaagccaaccgacttcacgcaggtcaatccgcacatcaaccgagcgctcgtg
ggcaaggcgctgcgcctgctcgacgtgcagcccgacgagcgcgtgatcgactggttctgc
ggcctcggaaacttcacgctgccgctggcgagcaaggcgcgcgaggtgctgggcatcgag
ggcagcgacacgctggtggcgcgcgccaccgacaactaccggaccaaccagcccgcgacc
tccgcccgccgtgcgctgtcgcccgcaaagtttgtcgcgcgcaacctgttcgaaatgacg
ccggccatgctggttgcagacggcagcgccgacaaatggctggtcgacccgccgcgcgaa
ggtgcgtttgcgcttgccaaggccatggccgacctgcatcagcagcccgaactgcgcagc
gacggctggacgccgccgaagcgcatcgtgtatgtgagctgcaatccgtcgacactggcg
cgcgatgccggcctgctggtgcaccaggcgggctaccgctgcacctttgcgggggtggtc
aacatgttcccgcacacggcgcacgtcgagtcgatcgcggtgttcgacctggaatga
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