KEGG   Variovorax sp. PMC12: C4F17_00900
Entry
C4F17_00900       CDS       T05380                                 
Name
(GenBank) DNA topoisomerase IV subunit B
  KO
K02622  topoisomerase IV subunit B [EC:5.6.2.2]
Organism
vam  Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:vam00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vam03032]
    C4F17_00900
   03036 Chromosome and associated proteins [BR:vam03036]
    C4F17_00900
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:vam02048]
    C4F17_00900
Enzymes [BR:vam01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     C4F17_00900
DNA replication proteins [BR:vam03032]
 Prokaryotic type
  DNA Topoisomerases
   C4F17_00900
Chromosome and associated proteins [BR:vam03036]
 Prokaryotic type
  Chromosome partitioning proteins
   Other chromosome partitioning proteins
    C4F17_00900
Prokaryotic defense system [BR:vam02048]
 Toxin-antitoxin system (TA system)
  Type II TA system
   Type II TA system related factors
    C4F17_00900
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C HATPase_c Toprim HATPase_c_3
Other DBs
NCBI-ProteinID: AVQ79616
LinkDB
Position
1:173440..175437
AA seq 665 aa
MATPPKTPPNSSSASSGYSEGSIRVLKGLEPVKQRPGMYTRTDNPLHIIQEVIDNAADEA
LAGYGKKIKVTLHADGSVSIEDDGRGIPFGLHPEEKAPVVELVYTRLHAGGKFDKGSGGA
YSFSGGLHGVGVSVTNALSKRLEVSTHREGSVAKLAFSGGDVIEQLEVRKLEAGERKQGT
TVRAWPDAKYFETSALPMGELTHLLRSKAVLMPGVSVTLTNEKTKESQQWLYKGGLSDYL
MQTLNGDPVIPLFEGGGHADKNADNFAEGEGADWCVAFTEDGQPVRESYVNLIPTSAGGT
HESGLRDGLFTAVKGFIELHSLLPKGVKLLPEDVFARASYVLSAKVLDPQFQGQIKERLN
SRDAVRLVSSFVRPALELWLNQHVDYGKKLAELAIKAAQTRQRAGQKVEKRKGSGVAVLP
GKLTDCESKDISHNEVFLVEGDSAGGSAKMGRDKESQAILPLRGKVLNTWEVERDRLFAN
TEIHDISVAVGVDPHGPNDTPDMSGLRYGKICILSDADVDGSHIQVLLLTLFFRHFPKLI
EAGHVYVAKPPLFRVDAPARGKKPASKVYALDEGELTATLDKLRKDGVREGAWSISRFKG
LGEMSAEQLWETTLNPDTRRLMQVQLGRFDFTSTQGEITKLMGKGEAAARRELMELRADD
VDIDV
NT seq 1998 nt   +upstreamnt  +downstreamnt
atggcgactccccccaagactccccccaattcttcgtccgcgtcctccggctactcggaa
ggctccatccgcgtgctcaagggcctggagcccgtcaagcagcgcccgggcatgtacacc
cgcaccgacaacccgctgcacatcattcaggaagtgatcgacaacgccgccgacgaggcg
ctcgcgggctacggcaagaagatcaaggtcacgctgcatgccgacggctcggtcagcatc
gaggacgacggccgcggcattcccttcggcctgcaccccgaggaaaaagcgcccgtggtc
gagctggtctacacccggctgcatgccggcggcaagttcgacaagggctcgggcggcgcc
tacagcttctcgggcggcctgcacggcgtgggcgtgtcggtgaccaacgcgctgtcgaag
cggctcgaggtgtcgacccaccgcgagggctcggtggcgaagctggccttcagcggcggc
gacgtgatcgagcaactcgaggtgcgcaagctcgaggccggcgagcgcaagcagggcacc
acggtgcgcgcatggcccgacgccaagtacttcgagacctccgcgctgcccatgggcgaa
ctcacgcacctgctgcgcagcaaggccgtgctgatgcccggcgtgagcgtcacgctcacg
aacgaaaagaccaaggaaagccagcagtggctctacaagggcggcctgagcgactacctg
atgcagacgctcaacggcgaccccgtcattccgctgttcgaaggcggaggccatgccgac
aagaacgccgacaacttcgccgaaggcgagggcgccgactggtgcgtggccttcaccgaa
gacggccagccggtgcgcgagagctacgtcaacctgattcccaccagcgccggcggcacg
catgaaagcggcctgcgcgacggcctgttcaccgcggtgaagggcttcatcgaactgcac
tcgctgctgcccaagggcgtgaagctcctgcccgaagacgtgttcgcgcgtgcttcttac
gtgctcagcgccaaggtgctcgacccgcagttccagggccagatcaaggagcgcctgaac
tcgcgcgacgcggtgcgcctggtgtcgagcttcgtgcggcccgcgctcgaactgtggctc
aaccagcacgtcgactacggcaagaagctggccgagctggccatcaaggccgcgcagacg
cgccagcgcgccggccagaaggtcgagaagcgcaagggttccggcgtggccgtgctgccc
ggcaagctgaccgactgcgagagcaaggacatcagccacaacgaggtcttcctggtcgag
ggcgactccgccggcggcagcgccaagatgggccgcgacaaggaaagccaggccatcctg
ccgctgcgcggcaaggtgctcaacacctgggaagtggagcgcgaccgcctcttcgccaac
accgaaatccacgacatctcggtggccgttggcgtcgacccccacggccccaacgacacg
cccgacatgagcggcctgcgctacggaaagatctgcatcctgagcgatgccgacgtggac
ggctcgcacatccaggtgctgctgctcacgctgttcttccgccatttccccaagctcatc
gaagccggccacgtgtatgtcgcaaaaccgccattgttccgggtggatgcccccgcgcgc
ggcaagaagccggcctccaaggtctacgcgctggacgagggcgaactgaccgccacgctc
gacaaactgcgcaaggacggcgtgcgcgaaggcgcctggagcatcagccgcttcaagggc
ctgggcgaaatgagcgcggaacaattgtgggaaaccacgctcaatccagacacccgccgc
ctgatgcaggtccaattgggccgtttcgacttcacgtccacccagggcgagatcaccaag
ctgatgggcaagggcgaagcggcggcgcggcgcgagctcatggaactgcgcgccgacgac
gtcgatatcgacgtctga

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