Variovorax sp. PMC12: C4F17_01470
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Entry
C4F17_01470 CDS
T05380
Name
(GenBank) type IV secretion protein Rhs
Organism
vam
Variovorax sp. PMC12
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
RHS
DUF6531
OCRE
Motif
Other DBs
NCBI-ProteinID:
AVQ79723
LinkDB
All DBs
Position
1:321582..326357
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AA seq
1591 aa
AA seq
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MAEQEAASKPQATEREPQTAVAPLNTIVKEDVAAASKAVDDWLRSFSGGYVTLERLTMVL
GSIPIVGNIMALVDVFLDIINIVEKKAKDSVDAFLNWVSLGINLIGLIPIPPSMAAARMS
LRPTLHLVKQELKTAASNLGEAIVTTLVGHLNATIMGELDKFIDGAIAKLDGILKSCADL
ADKIIDNLVDVMRRVLGQKDLFAVGTPASPETKVHDPKTQSTWSRMWGTAVRYTKQSANY
VAKAAASQLPDGVASRVNGVIGQMLDFKQQLRGQLSRLADKESQASIMWLLHKLRDALLK
RKGQRAAIVAPQAGAVAQKDKPGDQLGHIGKQAPANGRGCALKNRPAPARKGGSISLSMG
DESFTHTDFVLAAPLPIEWARTYASDLDAFDRGSLGARWITPYSMRVDITTPARGARQGQ
RSLLHHAADGRSHAYPVLAAGQSYFDAIEEVRVSRLGESLLVLDFGKPLPEGEQSEWREI
YEYVDGKQPHFRLVAQQAKDGMSIGLRYDHVIAETGERVLSDIISKHGEAVMAHVGTKPD
AQTGLIQSLWELKDGQVVRQLAAYTHDAQRDLVAAQDEDGASWRYTYSHHLVTRYTDRTG
RGMNLEYDGTGPDAKAVREWSDDGSFALKLEWDRNIRLTYVTDALGGETWHYYDIQGYTY
RIIHPDGLQEWFFRDDAKNVTRHVHTDGTTDDYTYDPDGNLQTHTRADGSRVHYEYDSLH
RLTGIRDAEGGVWKRDYDAQGHLTEEIDPLGHKTEYAYDKAGRPVRITDAKGGVKLMSYT
PRGRLASLTDCSGKTSRWTYDDRGRLTTAVDPAGNVTRHLYSRPEQDAVPHAQGSVPGLL
HEIVLPDGTREQTLHDPEGRMLAHVDGLGRRTRYSYGRAGLIAGRTDAEGHSLKYQWDLL
GRLVELRNENGSRHSLRYDLVGRLLEKIDFAQRTTQYRYEEGTGRLVEVQAGGRVVQLQA
DALGRMTERAVGSQVERFAFDRNGRMVEASNDDARLQWFYDPAGNLTREHQHDLQAGRTA
IWQHRYDALNQRVATIRPDGHTTQWLTYGSGHVHGLLLDGHDIVGFERDDLHREVLREQR
NGLTQKLRYDNAGRRLEQQVVPGQASAPGALQLQRTYGYDKAGQLVAIGDSHHGNLDYRY
DPVGRLVEANSRFGRETFAFDPAGNIVEPDGTSGGSRAPIVPLLDNLLEAYAGVRYRYDE
HGNVVERVCNGRSTTFAWDGFGRLSSATDEDGTQTSFAYDPMGRRISKRSRDSITRFGWD
GDTLAFESTRSLAAEQEDNGRGWSVHYIHEPRSFAPLIQLRQAHAIVPGRTPDVRELMAA
NGGAYDIEQDPLWNGELQLGQRSFEADEIAFYQCDHLGTPRDLTDHEGHVGWSAQYRAWG
EAREVISEAGRRAGLSNPIRFQGQYFDAETGLHYNRYRYYDPASGRYVSPDPLGLAGGLN
LYAYVGGNPVRGIDPLGLVDINLFPHNEAIRQSADNIPSPPGTFTVGSHGNPSIMTDTAL
RGVTPAQMAERIKAHPSYTEGQKVQLMSCETGKGTDPYAQKLANELNAPVVAPDKLLWIW
PHGAYKPAGQKADGTMDTADPGVWHTFNPKS
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacaggaagcggcatcgaagccgcaggcaaccgagcgcgaaccccagacggcg
gtggcgccgctgaacacgatcgtgaaggaagacgtcgcggctgcgagcaaggcggtggac
gactggctgcgttcgttcagcggcggctacgtgacgctggagcgcctgacgatggtgctg
ggcagcatcccgatcgtcggcaacatcatggcgctggtggatgtgttcctggacatcatc
aacatcgtcgagaaaaaggccaaggacagcgtcgatgcgttcctgaactgggtgagcctg
ggcatcaacctgatcgggctgattccgataccgccgagcatggcggccgcgcgcatgagc
ctgcggcccacgctgcacctggtgaagcaggagctgaagacggcggcctccaaccttggc
gaggccatcgtcaccacgctggtggggcacctgaacgccaccatcatgggcgagctggac
aagttcatcgacggtgcgatcgccaagctcgacggcatcctcaagagctgcgcggacctg
gccgacaagatcatcgacaacctggtggacgtgatgcgccgggtgctgggccagaaggac
ctgttcgcggtgggcacgcccgcgtcgccggagaccaaggtacacgacccgaagacgcag
agcacgtggagccggatgtggggcacggcggtgcgttacaccaagcagtcggcgaactac
gtggcgaaggcggcggcgagccagttgcccgatggcgtcgcgagcagggtcaacggtgtg
atcgggcagatgctggacttcaagcagcagctgcgtgggcagctctcgaggctggcggac
aaggagtctcaggccagcatcatgtggctgctgcacaagctgcgggatgcactgctgaag
aggaaaggccagcgcgcggcgatcgtggctccgcaggcgggagctgtggcgcagaaggac
aagcccggtgaccagctggggcatatcggcaagcaggcgccagcgaacggacgagggtgc
gctctcaagaatcgcccggcgccagcgcgcaaaggcggctccatcagtctctcgatgggt
gatgaaagcttcacccacacagacttcgtgctcgcagcaccgctgccgatcgaatgggcg
cgcacctacgccagcgacctcgatgccttcgaccggggcagcttgggcgctcgctggatc
accccctacagcatgcgcgtggacatcaccacgcccgcgcgaggcgcacgccagggccag
cgcagcctgctccaccacgccgcagatggccgcagccatgcgtatccggtgctggccgcg
ggccagagctacttcgacgcgatcgaggaagtccgcgtctcgcgcctgggcgagagcctg
ctggtgctggacttcggcaagcccttgcccgagggcgagcagagcgagtggcgcgagatc
tacgagtacgtcgacggcaagcagccccacttccgccttgtcgcccagcaggcgaaggac
ggcatgtccatcggcctgcgctacgaccacgtcattgcagagacgggcgagcgcgtgctc
agcgacatcatcagcaagcacggcgaagccgtcatggcgcacgtgggcacgaagcccgat
gcgcagaccgggctcatccagtcgctgtgggagttgaaggacggccaggtcgtgcggcaa
ttggctgcgtatacgcacgatgcgcagcgcgacctcgtcgccgcgcaggacgaggacggc
gcgagctggcgctacacctacagccaccacctcgtgacccgctacaccgaccgcaccggc
cggggcatgaacctcgagtacgacggcaccggccccgacgccaaggccgtgcgcgagtgg
tccgacgacggcagcttcgcgctgaagctggagtgggacaggaacatccggctgacctac
gtgaccgatgcgctgggcggggagacctggcactactacgacatccagggctacacctac
cgcatcatccatccggacgggctgcaggagtggttcttccgcgatgacgcgaagaacgtc
acgcgccatgtgcataccgacggcacgaccgacgattacacctacgaccccgacggcaac
ctgcagacgcacacgcgcgcggacggcagccgggtgcactacgagtacgacagcctgcat
cgcctgacgggcatccgcgatgcggaaggcggcgtgtggaagcgcgactacgacgcgcag
ggccatctcaccgaagagatcgatccgctggggcacaagaccgagtacgcctacgacaag
gccggcaggcccgtgcgcatcaccgatgcgaagggcggcgtgaagctgatgagctacacg
cctcgcggccggctcgcgagcctcacggattgctcgggcaagaccagccgctggacatac
gacgatcgcggccggctcaccacggcggtcgatcctgcgggcaacgtcacgcgtcacctc
tacagccgcccggaacaagacgcggtgccgcatgcccaaggcagcgtgccgggcctgctc
cacgagatcgtcctgcccgacggaacgcgcgagcagacactgcacgaccccgagggacgc
atgctcgcgcatgtcgacgggctcggacgccgcacgcgctacagctatggccgcgcaggc
ctgatcgcgggccgtacggatgccgaggggcattcgctcaagtaccagtgggacttgctg
ggccgtctcgtcgaattgcgcaacgagaatggcagccgccacagcctgcgctacgacctc
gtgggccggttgctggagaagatcgacttcgctcagcggaccacgcagtaccgttacgaa
gaaggcaccggccggctcgtcgaggttcaagcgggcgggcgggtggtgcagctgcaggcc
gatgcactgggcaggatgaccgagcgggccgtcggcagccaggtcgagcgcttcgccttc
gaccgcaacgggcgcatggtcgaagcatcgaacgacgacgcgcgcctgcagtggttctac
gacccggccggcaacctgacgcgtgagcaccagcacgatctgcaggccggacgcacggcg
atatggcagcaccgctacgacgcgctcaaccagcgcgtcgccacgatccgccccgacggc
cacacgacccagtggctcacctacggttcgggccacgtgcacggcctgttgctggacgga
cacgacatcgtcggcttcgagcgcgacgacctgcatcgcgaagtgctgcgcgagcagcgc
aacggcctgacccagaagctgcgttacgacaacgcaggcaggcggctggagcagcaggtc
gtgccgggccaggcgagcgcacccggcgcgctgcaactgcagcgcacctacggctacgac
aaggcggggcagctggtggcgatcggcgacagccatcacggcaacctcgattaccgctac
gacccggtcggccgcctggtcgaggccaacagccgtttcggacgggagaccttcgccttc
gatcctgcgggcaacatcgtcgagcccgacggcacgtccggaggaagccgggctcccatc
gttcccttgctcgacaacctgctcgaggcttatgccggcgtccgctatcgctacgacgag
cacggcaacgtggtcgagcgcgtgtgcaacggccgctcgaccaccttcgcatgggacggt
ttcgggcggctgagctccgccacggacgaagacggcacccagacctcgttcgcctacgac
ccgatgggccgccgcatctcgaagcgctcgcgagacagcatcacccggttcggctgggat
ggcgacacgctcgccttcgaaagcacgcggagccttgccgcagagcaggaagacaacgga
cgcggctggagcgtgcattacatccacgagccgcgctccttcgcgccgctgattcaactg
cgccaggcgcatgcgatcgtgccgggcaggacgcccgacgtgcgggagctcatggccgcc
aacggcggtgcctacgacatcgagcaagacccgctgtggaacggcgaactccagctggga
caacgcagcttcgaggcggacgagatcgccttctaccagtgcgaccatctcggcacgcct
cgggacctgaccgaccacgaaggtcacgtcggctggtcggcccagtacagggcctggggc
gaggcgcgcgaagtcatcagcgaagcggggcgacgtgccggcctatccaaccccatccgt
ttccagggacagtacttcgatgccgagacggggctgcactacaaccgctaccgctactac
gatccggcgagcggccggtatgtctcgcccgacccgctggggcttgcgggcggcctcaac
ctgtacgcatacgtcggcggcaaccccgttcgcggcatcgacccgctggggctggtcgac
atcaacctgttcccgcacaacgaggcgatccgccagtcggccgacaacatcccaagcccg
cccggcacgttcacggtcggctcccatggcaacccgagcatcatgaccgacaccgcgctc
aggggcgtcacccctgcgcagatggcagagcggatcaaggcgcacccgtcttacacagaa
ggccagaaggtgcagctgatgtcgtgcgagaccggcaagggcaccgacccctacgcccag
aagctggccaacgagctcaatgcgcctgtcgtggcgcccgacaagctcctgtggatctgg
ccccacggtgcctacaagcccgccggccagaaggccgacggcaccatggacaccgccgat
cccggcgtctggcataccttcaaccccaagtcatga
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