Variovorax sp. PMC12: C4F17_02160
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Entry
C4F17_02160 CDS
T05380
Symbol
glgX
Name
(GenBank) glycogen debranching enzyme GlgX
KO
K01214
isoamylase [EC:
3.2.1.68
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam00500
Starch and sucrose metabolism
vam01100
Metabolic pathways
vam01110
Biosynthesis of secondary metabolites
Module
vam_M00565
Trehalose biosynthesis, D-glucose-1P => trehalose
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
C4F17_02160 (glgX)
Enzymes [BR:
vam01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.68 isoamylase
C4F17_02160 (glgX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CBM_48
Alpha-amylase
Isoamylase_C
ISOA1-3_C
NRN1
Glyco_hydro_70
DUF5696
Motif
Other DBs
NCBI-ProteinID:
AVQ79844
LinkDB
All DBs
Position
1:479387..481549
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AA seq
720 aa
AA seq
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MTRKTNPTITAVWPGRPYPRGATWDGEGVNFALFSQHADKVELCLFDERGRHELQRIVLR
ERTDGVWHCYLPEARPGQAYGFRVHGAYKPEEGHRFNPNKLLVDPYAKDLVGQLRWGDAL
YGYTVGSKREDLSFDRRDSAPLMPKGRVLETAFTWGDDRRPSVPWQDMVIYEMHVRGFTM
NHPDVPPELRGTYAGLASAPVVDYLKRLGVTTVELLPVHSFLNDRHLAEKGLQNYWGYNT
LAFFAPEMRYSASGKVKEFKTMVKTLHSAGIEVILDVVYNHTCEGNQLGPTLSMRGVDNA
SYYIVNSDNRRYYDDFTGCGNTVNLEHPHALQLVMDSLRYWAEEMHVDGFRFDLASALAR
EAGKVENLGGFFDAIRQDPTLNRVKLIAEPWDLGHGGYQVGNFPLGWAEWNDQYRDGMRG
FWKGDGGLIGEVAKRVTGSEDLYGWSGKQPSASINFVTAHDGFTLHDLVSYNDKHNEANG
EDNRDGNSHNVSWNCGVEGPTDDPEVVSLRERQKRNLLATLLLSQGVPMLLAGDERGHTQ
QGNNNVYCQDNALGWLDWTPTPERLALVTFVERMVALRRAHPSFRRRTFFAGKPAEGETV
TDVYWLKPDGAEMRTEDWNDTNARCIAMYIPGGGIADRGPRGEHQHDDDFLILMNAHHDE
IPFTLPAIPHGAWRLLVDTASTTPPPTTEDAAALAPAWSEPAYPLQCRSLVVLSRPDVRP
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaaaaccaacccgaccatcaccgccgtctggcccggacgcccttacccgcgc
ggcgccacctgggacggtgaaggcgtcaacttcgcgcttttctcgcagcatgccgacaag
gtcgagctgtgccttttcgacgagcgcggccgccacgagctgcagcgcatcgtgctgcgc
gagcgcaccgacggtgtgtggcactgctacctgcccgaggcccggcccggccaggcctac
ggatttcgggtgcacggcgcctacaagcccgaggaggggcaccgcttcaaccccaacaag
ctgctggtcgacccctacgccaaggacctggtgggccagttgcgctggggcgacgcactc
tatggctacacggtcggcagcaagcgcgaagacctttccttcgaccgccgcgacagcgcg
ccgctgatgcccaagggccgcgtgctcgaaaccgccttcacctggggcgacgaccgccgc
ccctcggtaccctggcaggacatggtcatctacgagatgcacgtgcgcggcttcaccatg
aaccatcccgacgtgccgcccgagctgcgcggcacctacgccggcctggccagcgcgccg
gtggtcgactacctcaagcgcctgggcgtgaccaccgtcgagctgctgccggtgcacagc
ttcctcaacgaccggcacctggccgagaaggggctgcagaactactggggctacaacacg
ctggccttcttcgcccccgagatgcgctacagcgcctcgggcaaggtgaaggagttcaag
acaatggtcaagacgctgcactccgcgggcatcgaggtgatcctggacgtggtctacaac
cacacctgcgagggcaaccagctcggccccacgctgtcgatgcgcggcgtggacaacgcc
tcctactacatcgtgaactccgacaaccggcgctactacgacgacttcaccggctgcggc
aacaccgtcaacctcgagcatccgcatgcgctgcaactggtgatggattcgctgcgctac
tgggccgaggaaatgcacgtcgacggcttccgcttcgacctggcatcggcactggcgcgc
gaggcgggcaaggtggaaaacctcggtggcttcttcgacgccatccggcaggacccgacg
ctcaaccgcgtcaagctcatcgccgagccctgggacctgggccacggcggctaccaggtg
ggcaactttccgctgggctgggccgagtggaacgaccagtaccgcgacggcatgcgtggc
ttctggaagggcgacggcgggctcattggcgaagtggccaagcgcgtcaccggctccgaa
gacctgtacggctggtcgggcaagcagcccagcgcgagcatcaacttcgtcacggcgcac
gacggcttcacgctgcacgacctggtttcctacaacgacaagcacaacgaggccaacggc
gaggacaaccgcgacggcaacagccacaacgtgtcgtggaactgcggcgtcgaaggcccc
accgacgaccccgaggtggtgagcctgcgcgagcgccagaagcgcaacctgctggccacg
ctgctgctgtcgcagggcgtgccgatgctgctggcgggcgacgagcgcggccatacgcag
cagggcaacaacaacgtctactgccaggacaacgcgctgggctggctcgactggacgccc
acgcccgagcggctggcgctggtcaccttcgtcgaacgcatggtcgcgctgcgccgcgcg
catccgtcgttccgccgccgcaccttcttcgccggcaagccggccgagggcgagaccgtg
accgacgtctattggctcaagcccgacggcgccgagatgcgcacggaagactggaacgac
accaacgcacgctgcatcgcgatgtacatccccggcggcggcatcgccgaccgcgggccg
cgcggcgagcaccagcacgacgacgacttcctgatcctgatgaacgcccaccacgacgaa
attcctttcacgctgccggccattccgcacggcgcctggcgcctgctggtcgacaccgcg
agcaccacgccgccgcccaccaccgaggacgccgccgcgctggcgcccgcatggtcggag
ccggcctatccgctgcaatgccgctcgctggtggtgttgagccggccggacgtgcggcca
tga
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