Variovorax sp. PMC12: C4F17_02475
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Entry
C4F17_02475 CDS
T05380
Name
(GenBank) DNA-binding protein
KO
K00375
GntR family transcriptional regulator / MocR family aminotransferase
Organism
vam
Variovorax sp. PMC12
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vam03000
]
C4F17_02475
Transcription factors [BR:
vam03000
]
Prokaryotic type
Helix-turn-helix
GntR family
C4F17_02475
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Paralog
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GFIT
Motif
Pfam:
Aminotran_1_2
GntR
HTH_41
HTH_Crp_2
HTH_IclR
Fe_dep_repress
Motif
Other DBs
NCBI-ProteinID:
AVQ79904
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Position
1:complement(552998..554434)
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AA seq
478 aa
AA seq
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MASGKKPSRNTPTLDRARATPLFRQIYERYRNAIEQGTLRPGDRVASARNLASELGVARG
TVEAAFSQLTGEGYLSSRGQAGTVVSPSLPVQHAARREPLRVEAPVAIGGLMQPGEPPLL
QLGIPSFDAFPRKLWSRLAARRMRGMGVADMFYGAPAGFAPLREAIAAYLQVSRGVACHP
SQVLVTPGYRASLALVANVLLKKDDRVWIEDPGFPPTHEVLRRTGQRAVPVPVDEEGLVV
SRGLRKAPKARMAVVTPSHQAPLGVSMSLARRLQLLEWASTANAWIVEDDYDGEYRYAGP
PLPALKSLDGNDRVLYAGSFSKVLYPGLALGYLVVPESLRACFEEVARIGSNGSPQLMQA
IVADFMREGHFSRHLKKMRLLYARRRSMLASALLKAFGDAVRIDLKSGGMHLIARFDGLG
HRDAELARRAQQAGLNCQPLSGRHVAASGDEGLLMGFTNIASAAEANRLAALLRAAFG
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcggcaagaaaccatcgaggaacactccgacgctcgaccgcgccagggccacg
cccctgttccggcagatctacgagcgctaccgaaacgccatcgagcaaggcacgctgcgc
cccggcgaccgcgtggcatcggcgcgcaacctggccagcgaactgggcgtggcgcgcggc
accgtcgaggcggccttcagccagttgacgggcgaaggctatctttcgtcgcgcgggcag
gcgggcacggtggtctcgccgtcgctgccggtgcagcatgcggcgcggcgcgaacccctg
cgcgtggaggcgcccgtcgccatcggcggactcatgcagccgggcgaaccaccgttgctg
caactcggcatcccttcgttcgatgccttcccgcgcaagctgtggtcgcgcctggcggcg
cggcgcatgcggggcatgggcgtggccgacatgttctacggcgcgcccgcgggcttcgcg
ccgttgcgcgaggccatcgcagcctacctgcaggtgtcgcgcggcgtggcctgccatccc
tcgcaggtgctggtgacaccgggctaccgcgcctcgctcgcgctggttgcgaacgtgctg
ctcaagaaggacgaccgcgtgtggatcgaagacccgggctttccgccgacacatgaagtg
ctgcgccgcaccggccagcgcgcggtgccggtgccggtcgacgaagagggactggtggtc
tcgcgcgggctgcgcaaggcgccgaaggcgcgcatggccgtcgtcacgccctcgcaccag
gcaccgctgggcgtgtcgatgtcgctggcacggcggctgcagctgctcgaatgggcctcc
acggccaatgcctggatcgtcgaggacgactacgacggcgaataccgctatgccggtccg
ccgctgccggcgctcaagagcctggacggcaacgaccgcgtgctgtatgcgggcagcttc
tcgaaggtgctgtatccgggcctggcactcggctacctggtggtgcccgagtcgctgcgc
gcatgcttcgaggaggtagcgcgcatcggctcgaacggcagcccgcagctcatgcaagcc
atcgtggccgacttcatgcgcgagggccatttctcgcgccacctgaagaagatgcggctg
ctgtacgcgcgccgccggagcatgctcgcctcggccttgctgaaagcttttggcgacgcg
gtgcgcatcgacttgaagagcggcggcatgcacctgatcgcccgcttcgacgggctcggc
catcgcgatgcggagctggcccgccgtgcgcaacaggccgggctgaactgccagccgttg
tcgggccggcatgtcgcggcgtccggcgacgaagggctgctgatgggcttcaccaacatc
gcgagcgccgccgaggcgaaccggctcgcggccctgcttcgtgccgcgttcggctga
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