Variovorax sp. PMC12: C4F17_02565
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Entry
C4F17_02565 CDS
T05380
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
vam
Variovorax sp. PMC12
Pathway
vam03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4F17_02565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vam03400
]
C4F17_02565
Enzymes [BR:
vam01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
C4F17_02565
DNA repair and recombination proteins [BR:
vam03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C4F17_02565
Prokaryotic type
C4F17_02565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-ProteinID:
AVQ84438
LinkDB
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Position
1:complement(569333..570160)
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AA seq
275 aa
AA seq
DB search
MQETLLDWQDDLPDEWRSALGGVRLDFEGVDARLELEAWEPIFPARKGRRLPGMPAGAHM
LKAFDSVMPSKVRCLVLGQDPYPSIDIATGRAFEVGNVARWRELDKMFTKSIRAWVQMLA
EARTGDAGYGGSFANWPRTLADIESGALPFETPDWLSDRWIEDGVLLLNTSFTLSRFQVA
IDPHQSHGHLVLWKPLIQAVLAHLLQRGEPLVCMGFGASAAEAFAAAGIGEGRNGNVACI
LREHPAYADAVLGLPNPFVLCNTHLAEMDSTPIHW
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgcaagaaaccctgctcgactggcaggacgacctgcccgatgaatggcgcagcgcgctc
ggcggcgtgcggctggacttcgaaggcgtggacgctcgactcgagctggaagcctgggaa
cccatctttccggcgcgcaagggccgccgcctgcccggcatgccggcaggcgcgcacatg
ctcaaggccttcgacagcgtgatgccctcgaaggtgcgctgcctggtgctggggcaagac
ccttacccctcgatcgacatcgccaccggccgcgccttcgaggtcggcaacgtcgcccgg
tggcgcgagctcgacaagatgttcaccaagagcatccgcgcctgggtgcagatgctggcc
gaggcccgcacgggcgacgcgggctacggcggcagcttcgccaactggccgcgcacgctg
gcggacatcgaatcgggcgcgctgccattcgagacacccgactggctgagcgaccgctgg
atcgaagacggcgtgctgctgctcaacacctccttcacgctcagccgcttccaggtggcc
atcgacccgcatcagtcgcacggacacctggtgctgtggaagccgctcatccaggcggtg
ctggcccacctgctgcagcgcggcgagccgctggtctgcatgggcttcggcgcttcggcc
gcggaggccttcgcggcggcgggcatcggcgagggccgcaacggcaatgtcgcctgcatc
ctgcgcgagcaccccgcctacgcggacgccgtgctcggcctgcccaaccccttcgtgctc
tgcaacacccatctggccgagatggacagcacccccatccactggtga
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